Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_O10
         (1086 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 538 PPPPXXXKXPXPPPPP 491
           PPPP   + P  PPPP
Sbjct: 12  PPPPPGFEPPSQPPPP 27



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 538 PPPPXXXKXPXPPPPP 491
           PPPP       PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 536 PPPPXXKXTXPPPPP 492
           PPPP      PPPPP
Sbjct: 765 PPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 538 PPPPXXXKXPXPPPPP 491
           PPP      P PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPP 767



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 538 PPPPXXXKXPXPPPPP 491
           PP P     P PPPPP
Sbjct: 753 PPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 538 PPPPXXXKXPXPPPPP 491
           PPP      P PPPPP
Sbjct: 766 PPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,221,701
Number of Sequences: 5004
Number of extensions: 13378
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 571756234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)