Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_N24
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 27 0.18
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 32 0.70
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 32 0.70
08_01_1032 + 10447474-10448030,10448784-10449813 27 1.2
12_02_0299 - 17051570-17052474,17053542-17053755 31 1.2
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 31 1.6
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 27 2.0
06_01_0178 + 1386981-1387505 30 2.1
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 29 3.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 6.6
04_04_1129 - 31107892-31110246 24 7.2
04_03_1022 - 21778315-21779007 25 8.0
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 28 8.7
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 27.1 bits (57), Expect(2) = 0.18
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 439 PPPPPPPXXXW 407
PPPPPPP W
Sbjct: 427 PPPPPPPVGYW 437
Score = 25.4 bits (53), Expect(2) = 0.18
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 448 GXXPPPPPPP 419
G PPPPPPP
Sbjct: 421 GPPPPPPPPP 430
>03_02_1033 +
13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 593 PXAPXGTPXLRPXPXPPP-AXXPA 661
P AP GTP + P P PPP A PA
Sbjct: 6 PQAPAGTPPMAPLPVPPPIAPIPA 29
>03_02_1031 +
13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 593 PXAPXGTPXLRPXPXPPP-AXXPA 661
P AP GTP + P P PPP A PA
Sbjct: 6 PQAPAGTPPMAPLPVPPPIAPIPA 29
>08_01_1032 + 10447474-10448030,10448784-10449813
Length = 528
Score = 27.1 bits (57), Expect(2) = 1.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 439 PPPPPPPXXXW 407
PPPPPPP W
Sbjct: 136 PPPPPPPAEAW 146
Score = 22.6 bits (46), Expect(2) = 1.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1
Query: 448 GXXPPPPPP 422
G PPPPPP
Sbjct: 134 GPPPPPPPP 142
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +2
Query: 593 PXAPXGTPXLRPXPXPPPAXXPAXXLXXLXXXXXYAPPPPXFXXFXXXRXXXXRPPXPHX 772
P P L P P PP P L + PPPP F + PP PH
Sbjct: 255 PPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQL----PPLPHF 310
Query: 773 P 775
P
Sbjct: 311 P 311
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 593 PXAPXGTPXLRPXPXPPPAXXPAXXLXXLXXXXXYAPPPP 712
P P P P P PPP P L PPPP
Sbjct: 342 PVQPSNAPPPPPPPPPPPPPPPPPKLNTAPKPPPPPPPPP 381
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 27.1 bits (57), Expect(2) = 2.0
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = -1
Query: 439 PPPPPPPXXXWXXXXXXXXXXXXPPXFXXXPPXXXXCXXXXXXXGGGGXFXXFXKPP 269
PPPPPPP PP PP GG PP
Sbjct: 372 PPPPPPPAVTQQQDVKTSCGPAVPPPPPPTPPPPPPLLAPKQQSSGGPILPPAPAPP 428
Score = 21.8 bits (44), Expect(2) = 2.0
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 448 GXXPPPPPPP 419
G PPPPPP
Sbjct: 361 GNMRPPPPPP 370
>06_01_0178 + 1386981-1387505
Length = 174
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/54 (31%), Positives = 19/54 (35%)
Frame = -2
Query: 774 GXXGXGGRXXXXRXXXXXXNXGGGGA*XXX*XXXXRXXAGXXAGGGXGXGRRXG 613
G G GG+ GGGG AG GGG G GR+ G
Sbjct: 53 GAGGKGGKGGAGGHGGAGGGGGGGGGKGRKGGAGGHGGAGGGGGGGGGKGRKGG 106
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 554 PXXXXPXXXXXXXPXAPXGTPXLRPXPXPPPAXXPA 661
P P P AP TP P P PP A PA
Sbjct: 171 PAPPPPQAPAPTPPQAPAPTPPRAPTPTPPQAPLPA 206
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Frame = +2
Query: 593 PXAPXGT-PXLRPXPXPPPAXXPAXXLXXLXXXXXYAPPPPXFXXFXXXRXXXXRPPXPH 769
P P G P P P PPP P L PPPP PP P
Sbjct: 551 PPPPSGNKPAFSPPPPPPP--PPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPP 608
Query: 770 XP 775
P
Sbjct: 609 PP 610
Score = 24.2 bits (50), Expect(2) = 6.9
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = -1
Query: 439 PPPPPPPXXXWXXXXXXXXXXXXPPXFXXXPP 344
PPPPPPP PP PP
Sbjct: 689 PPPPPPPPLPPANRTNGPGVPSAPPPPPPPPP 720
Score = 22.6 bits (46), Expect(2) = 6.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1
Query: 448 GXXPPPPPP 422
G PPPPPP
Sbjct: 688 GPPPPPPPP 696
>04_04_1129 - 31107892-31110246
Length = 784
Score = 24.2 bits (50), Expect(2) = 7.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 436 PPPPPPXXXW 407
PPPPPP W
Sbjct: 34 PPPPPPAAEW 43
Score = 22.6 bits (46), Expect(2) = 7.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1
Query: 448 GXXPPPPPP 422
G PPPPPP
Sbjct: 31 GPSPPPPPP 39
>04_03_1022 - 21778315-21779007
Length = 230
Score = 25.0 bits (52), Expect(2) = 8.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 582 PPXPXPPPXALPXXXLXP 635
PP P PPP +P L P
Sbjct: 38 PPPPPPPPPYVPPHLLPP 55
Score = 21.8 bits (44), Expect(2) = 8.0
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +3
Query: 552 RPXXXXRXXXPPXPXPPP 605
RP PP P PPP
Sbjct: 26 RPPCSSAHLLPPPPPPPP 43
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 602 PXGTPXLRPXPXPPPAXXPAXXLXXLXXXXXYAPPP 709
P P L P P PPPA L APPP
Sbjct: 89 PPPPPPLLPTPPPPPASISPTPAPPLPPPPAPAPPP 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,271,356
Number of Sequences: 37544
Number of extensions: 354801
Number of successful extensions: 9791
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8232
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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