Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_N23
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 32 0.11
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 27 3.1
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 5.5
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 7.2
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 26 7.2
SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces... 25 9.6
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 9.6
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.6
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 9.6
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 25 9.6
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Frame = -2
Query: 567 FQTLSDSFVSMFVLLTSANFPDVMMPSYAK-----SKWY-ALFXILYIITVLYVLMNLML 406
F T +SF+ M+ +LTS N+ DVM A+ W F L+ + V++++ +
Sbjct: 681 FATTYESFLYMYQILTSENWTDVMFAIQARLAHLHLSWIPGAFFTLWFLFSNNVVLSMFI 740
Query: 405 AVVYETFTRIERE 367
AV+ F E +
Sbjct: 741 AVIQVNFAPSESD 753
Score = 30.3 bits (65), Expect = 0.34
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = -2
Query: 567 FQTLSDSFVSMFVLLTSANFPDVMMPSYAKSKWYALFXILYIITVLYV---LMNLMLAVV 397
F +S +FV+++S F D+M Y + +L+II+ ++ LM+L++AVV
Sbjct: 424 FDNFFNSLELIFVIMSSNGFTDIMYD--IMDAEYFVSCLLFIISAYFLTLWLMSLVIAVV 481
Query: 396 YETFTRIE 373
+F ++
Sbjct: 482 TSSFIDLQ 489
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 606 GFYLFSEHVDNGHFQTLSDS 547
G YLF E VDNG L+DS
Sbjct: 122 GQYLFPESVDNGQKHVLNDS 141
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 52 GGGGAGDRLERRRGVPRGARGLRRPAQREHI 144
GGGGAG R G+R + PAQ E I
Sbjct: 177 GGGGAGPHARRSHPSFGGSRPSQPPAQNEVI 207
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/69 (20%), Positives = 28/69 (40%)
Frame = -2
Query: 606 GFYLFSEHVDNGHFQTLSDSFVSMFVLLTSANFPDVMMPSYAKSKWYALFXILYIITVLY 427
G+ +S ++ + F + F L F + + S W+ F + I+ LY
Sbjct: 267 GYTRYSTNMRDRLFTEAKIPLIICFFALFVVRFFAITIQSIHLGLWFCFFFLTACISALY 326
Query: 426 VLMNLMLAV 400
+L +A+
Sbjct: 327 ILFGAFVAL 335
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -2
Query: 567 FQTLSDSFVSMFVLLTSANFPDVM 496
FQTL++ ++ +++T+ FPD+M
Sbjct: 184 FQTLTEEALADTIIVTAKGFPDLM 207
>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 51
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 122 AQRSANTSYTFANSARERPPVPVWFR 199
+ +S T A +AR+ P+P W R
Sbjct: 3 SHKSFRTKQKLAKAARQNRPIPQWIR 28
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 52 GGGGAGDRLERRRGVPRGARGLRRPAQREHIVHVR 156
GG GAGD + R GARG RR +++ H R
Sbjct: 138 GGRGAGDTVVSRSSGAGGARG-RRFGWKDYDKHQR 171
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 9.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 618 YSLLGFYLFSEHVDNGHFQTLSDSFVSMFVLLTSANFPD 502
YSLL LFS+ D+GH ++ F S+F LL D
Sbjct: 739 YSLLPVILFSKPEDDGH---VAAHFESIFSLLKEKALED 774
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 531 VLLTSANFPDVMMPSYAKSKWYALFXILY 445
VLLT A PD++ K W L ++Y
Sbjct: 307 VLLTLATHPDLLFFDVQKISWITLAHVVY 335
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 9.6
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = -2
Query: 513 NFPDVMMPSYAKSKWYA 463
N+P +++P+YAK W++
Sbjct: 570 NWPRLVLPTYAKGGWFS 586
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,015
Number of Sequences: 5004
Number of extensions: 54739
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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