Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_N12
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 184 1e-47
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 182 5e-47
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 38 0.002
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.4
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.6
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.4
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 7.4
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 184 bits (448), Expect = 1e-47
Identities = 91/150 (60%), Positives = 105/150 (70%)
Frame = -2
Query: 779 TXXNPX*WFXILSXPFGQRAVXXFXAHTGVTLIAXRFTPGAFTNQIQAAFRELRXLIVLD 600
T NP I S P+G RAV F AHTG T IA RFTPG FTN I +RE R +IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 599 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 420
P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189
Query: 419 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 330
G + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 182 bits (443), Expect = 5e-47
Identities = 89/152 (58%), Positives = 105/152 (69%)
Frame = -2
Query: 779 TXXNPX*WFXILSXPFGQRAVXXFXAHTGVTLIAXRFTPGAFTNQIQAAFRELRXLIVLD 600
T NP + + +G RAV F AHTG T IA RFTPG FTN I +RE R ++V D
Sbjct: 69 TIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTD 128
Query: 599 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 420
P D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+R
Sbjct: 129 PRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVR 188
Query: 419 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 324
G L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 189 GTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -2
Query: 614 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 438
+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 373 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 471
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 575 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 465
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 412 FPVTSAGML--WLICSSTVTLKKVKRM 338
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 686 LIAXRFTPGAFTNQIQAAFRELRXLIVLDPAQDHQPITEASYVN 555
L+ +FTP +N A R R H P+ ++ YVN
Sbjct: 128 LLNFQFTPRTNSNAFSAPPRRSRGYNTYGQGSGHHPMDKSRYVN 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,259
Number of Sequences: 5004
Number of extensions: 51402
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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