Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_N08
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.011
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.019
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.41 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 538 PPPPPSXXXXXPPPXGGGXFXXFFXXPPPP 627
           PPPPPS      PP G G        PPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 537 PPPPPLXXXXXPPPPGGGXFFXXFXXPPPPP 629
           PPPPP       PP G G        PPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = +3

Query: 537 PPPPPLXXXXX--PPPPGGGXFFXXFXXPPPPPXFFXXKXKXPP 662
           PPPPP        P PP G         PPPPP       + PP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRS-----APPPPPPRSAPSTGRQPP 377


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 537 PPPPPLXXXXXPPPPGGGXFFXXFXXPPPPP 629
           PPP P+     PPPP  G        PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 30.7 bits (66), Expect = 0.23
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 537 PPPPPLXXXXXPPPPGGGXFFXXFXXPPPPP 629
           P PPP      PPPP           PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
 Frame = +3

Query: 537 PPPPPLXXXXXPPP-----PGGGXFFXXFXXPPPPPXFFXXKXKXPP 662
           PPPPP      P P     P           PPPPP         PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = +3

Query: 540 PPPPLXXXXXPPPPGGGXFFXXFXXPPPPPXFFXXKXK 653
           PPPP      PPPPG   F      PPPPP  +  K K
Sbjct: 9   PPPP------PPPPG---FEPPSQPPPPPPPGYVKKRK 37



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 570 PPPPGGGXFFXXFXXPPPPPXFFXXKXKXPP 662
           PPPP  G        PPPPP +   +    P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 537  PPPPPLXXXXXPPPPGGGXFFXXFXXPPPPP 629
            PPPPP+     PPPP            PPPP
Sbjct: 1707 PPPPPM---SVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -2

Query: 628 GGGGGXKKXXKKXPPPGGGGXXXXXRGGGGG 536
           GGG G        PPPG GG       GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,750
Number of Sequences: 5004
Number of extensions: 21072
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)