Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_N07
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    34   0.026
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    27   4.0  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.0  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   7.0  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   7.0  
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe...    26   7.0  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    25   9.2  

>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 33.9 bits (74), Expect = 0.026
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 184 KANPPLQYVTWTKD-KRLLEPYQTKDIVIMNNGSLLFTRVNQNHQGRYTCTPYNAQGK 14
           KA   +  V WT D +RLL    T +  + N  +  F  +NQ+H     C  ++  G+
Sbjct: 79  KARHVINVVRWTPDGRRLLTGSSTGEFTLWNGLTFNFELINQSHDYAVRCAEWSTDGR 136


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 342 SAATGLITRAPSLRMVTLVSKAATSATGAPSRNHFTVT 455
           S    +I R PS+  +  V+   +  TG  + NH TVT
Sbjct: 305 SKKRAIIRRLPSVETLGSVNVICSDKTGTLTMNHMTVT 342


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 133 LEPYQTKDIVIMNNGSLLFTRVNQNHQ 53
           +EP +++ IV  N  +L+F  VNQN Q
Sbjct: 67  IEPNKSQTIVKKNPDNLIFVAVNQNVQ 93


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 21/83 (25%), Positives = 39/83 (46%)
 Frame = +3

Query: 306 PLETSHKYCPESSAATGLITRAPSLRMVTLVSKAATSATGAPSRNHFTVTFPGRAFASHE 485
           PL+        S+ A+G ++R PS   ++ +S   +S    P+    +   P R  ++  
Sbjct: 456 PLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMPHKPASQ--SNVGPVRISSNRR 513

Query: 486 NWTFSPSSLV*FVGGIVMTAPPA 554
           +  FS SS V  V  ++  +PP+
Sbjct: 514 SRKFSSSSRV-SVSNLLAGSPPS 535


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 333 PESSAATGLITRAPSLRMVTLVSKAATSATGAPSRNHFT 449
           P+     GL+T  P LR +    K A  +  A +R +FT
Sbjct: 765 PKEKLEIGLLTSVPLLRQIIHDIKEARDSDHASTRMYFT 803


>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 224 FALPFGWSGSMLHKSQSTSAVRYLDKRQEIIGALSNEGHCYNEQR 90
           F  PF W    LHK Q      ++D   E+ G+L++    Y  QR
Sbjct: 176 FKYPFPWVPGKLHKRQG-----FIDINFEVSGSLASGTVHYQSQR 215


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 645 IRSSVPS-LNIPTVPDGSTGVCIXYTIIFRNWCSL 746
           +RS++   +N+ T+P G  G  I    +F   CSL
Sbjct: 52  LRSNIKKKINVSTLPQGINGKRIVQKAVFDELCSL 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,883
Number of Sequences: 5004
Number of extensions: 71813
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)