Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_N07
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964...    33   0.34 
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504...    29   4.1  
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771...    29   5.5  
01_01_1180 - 9401669-9402412,9402672-9402698                           28   7.2  
09_02_0291 - 6980273-6980737,6980893-6981239,6981259-6981607           28   9.6  

>01_05_0387 -
           21695277-21695351,21696186-21696228,21696325-21696454,
           21696812-21697028,21697202-21697248,21698132-21698228,
           21698637-21698687,21698788-21698919,21699345-21699499,
           21700461-21700534,21700566-21700730,21701368-21701420
          Length = 412

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 1/132 (0%)
 Frame = -1

Query: 640 NIRHEDIGDYTCIARNGEGQVSHTARVIIAGGAVITMPPTNQTKLEGEKVQFSCEAKALP 461
           N  H+D G      R GE  V+H  RV++   A +        +L    +      K  P
Sbjct: 60  NSVHDDGGGEKTCRRRGETMVAHEKRVVVVRAAAVV-----AGELLSPPLPMLVVTK--P 112

Query: 460 GNVTVKWFREGAPVAEVAALETR-VTIRRDGALVINPVAADDSGQYLCEVSNGIGDPQSA 284
           G + V++    A    V   +   V + R GAL I  +A  D+   +  +  G    ++ 
Sbjct: 113 GQLPVEFLEPSAAQKLVIGFDCEGVDLCRHGALCIMQIAFPDAVYLVDAIEGGKELIEAC 172

Query: 283 SAYLNVEYPAKV 248
              L  EY  KV
Sbjct: 173 KPALESEYVTKV 184


>09_02_0152 +
           5040845-5041001,5042645-5042757,5043556-5043816,
           5043954-5044058,5044726-5044791,5044882-5044999,
           5045018-5045103,5045900-5046424,5046534-5047115,
           5047203-5047385,5049326-5049392,5049685-5049791,
           5049977-5050076,5050228-5050313,5050394-5050485,
           5050591-5050705,5050792-5050983
          Length = 984

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +2

Query: 206 SQTEGQILNCGCKGYFRRIFNIKIGRCALWVSDAIRNFTQILSGVVSSYRVNNKSSVSAD 385
           S    + L  G  G+  RI++++  RC  W+S      T  ++GV+ + +  + +S+S  
Sbjct: 99  SNKGSRYLCSGGSGHIVRIWDLQRKRCIKWLS----GHTDTITGVMYNCKDEHLASISMK 154

Query: 386 GD 391
           GD
Sbjct: 155 GD 156


>06_01_0993 +
           7710016-7710977,7711081-7711316,7711422-7711501,
           7711977-7712072,7712995-7713892,7713983-7714093,
           7714657-7714751
          Length = 825

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
 Frame = -1

Query: 295 PQSASAYLNVEYPAKVTFTPTVQYLPFRLAGVVQCYIKANPPLQYVTWTKDKRLLEPYQT 116
           P     ++++EY      TP +Q     L G+  C       +   T   + ++      
Sbjct: 377 PSKLGTHISLEYLISFRLTPEIQDYLLHLKGLWLCPPPKEVEVDLSTLQPENKITREEMV 436

Query: 115 KDIVIMNNGSLL---FTRVNQNHQGRY-TCTPYN 26
           K I+I+    LL    T++N N    Y +C+  N
Sbjct: 437 KKIIIIVGEQLLLDSLTKLNYNPSEWYKSCSEVN 470


>01_01_1180 - 9401669-9402412,9402672-9402698
          Length = 256

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 297 SPMPLETSHKYCPESSAATGLITRAPSLRMVTLVSKAATSA 419
           +P P  T H++ P   AA G  +RA S    +  ++A  +A
Sbjct: 21  TPAPTSTHHEWQPREDAAAGEASRASSANRASPGNRAGAAA 61


>09_02_0291 - 6980273-6980737,6980893-6981239,6981259-6981607
          Length = 386

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -1

Query: 319 EVSNGIGDPQS-ASAYLNVEYPAKVTFTPTVQYLPFRLAGVVQCYIKANPPLQYVTW 152
           E  +G  DP+     Y  V Y A+V       YLP  L    + ++   PP    +W
Sbjct: 240 EKYDGSTDPEEFLQVYSTVLYAARVDDNALANYLPTALKSSARSWLMHLPPYSISSW 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,610,218
Number of Sequences: 37544
Number of extensions: 493239
Number of successful extensions: 1330
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)