Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_M24
         (1058 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    40   6e-04
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    33   0.018
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.12 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   0.28 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   0.44 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.83 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.83 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   5.9  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   5.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 17/33 (51%), Positives = 17/33 (51%)
 Frame = +1

Query: 724 GGXPPPPXXXKKXXXXXXPPPPPPPPPXXXGGG 822
           GG PPPP           PPPPPPPPP    GG
Sbjct: 759 GGPPPPPPPP--GVAGAGPPPPPPPPPAVSAGG 789



 Score = 31.5 bits (68), Expect = 0.21
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 722 GGXPPPPXXXXKXXXXXXXPPPPPP 796
           GG PPPP            PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 734 PPPXXXXKXXXXXXXPPPPPPPPPXXXGG 820
           P P            PPPPPPPP     G
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 23.0 bits (47), Expect(2) = 8.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 827 PPPPPXXXGGGGGG 786
           PPPPP   G  G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 21.0 bits (42), Expect(2) = 8.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 830 PPPPPP 813
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 33.1 bits (72), Expect = 0.068
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 779 PPPPPPPPPXXXGGGG 826
           PPPPPPPPP     GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 30.3 bits (65), Expect(2) = 0.018
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 781 PPPPPPPPXXXGGGGG 828
           PPPPPPPP      GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 26.2 bits (55), Expect(2) = 0.24
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 785 PPPPPPPXXXGGGGGG 832
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 23.4 bits (48), Expect(2) = 0.018
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 778 PPPPPPPP 801
           P PPPPPP
Sbjct: 905 PTPPPPPP 912



 Score = 23.4 bits (48), Expect(2) = 0.24
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 782 PPPPPPPP 805
           P PPPPPP
Sbjct: 905 PTPPPPPP 912


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 727 GXPPPPXXXKKXXXXXXPPPPPPP 798
           G PPPP           PPPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 725 GXPPPPXXXXKXXXXXXXPPPPPP 796
           G PPPP            PPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 563 PXGGXXPPPPPPXF 522
           P G   PPPPPP F
Sbjct: 5   PPGNPPPPPPPPGF 18



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 781 PPPPPPPP 804
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 721 GGGXPPPPXXXKKXXXXXXPPPPP 792
           G   PPPP    +      PPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect(2) = 0.28
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 828 PPPPPXXXGGGGGGGG 781
           PPP P   GG GG GG
Sbjct: 200 PPPGPGGFGGFGGFGG 215



 Score = 24.2 bits (50), Expect(2) = 0.28
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 804 GGGGGGGGGXXXXXXFFXXXXGGGGXP 724
           GG GGG GG       F    GG G P
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGGHGGP 271


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect(2) = 0.44
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 784 PPPPPPPXXXGGG 822
           PPPPPPP     G
Sbjct: 337 PPPPPPPRSNAAG 349



 Score = 24.2 bits (50), Expect(2) = 5.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 784 PPPPPPPXXXGGG 822
           PPPPPPP     G
Sbjct: 311 PPPPPPPSRRNRG 323



 Score = 24.2 bits (50), Expect(2) = 0.96
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 781 PPPPPPPPXXXGG 819
           PPPPPPP     G
Sbjct: 337 PPPPPPPRSNAAG 349



 Score = 23.8 bits (49), Expect(2) = 0.44
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 778 PPPPPPP 798
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.4 bits (48), Expect(2) = 0.96
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +1

Query: 733 PPPPXXXKKXXXXXXPPPPPPPPP 804
           PPP               PPPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPP 316



 Score = 20.6 bits (41), Expect(2) = 5.8
 Identities = 8/22 (36%), Positives = 8/22 (36%)
 Frame = +1

Query: 736 PPPXXXKKXXXXXXPPPPPPPP 801
           PPP           PP  PP P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRP 274


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 779 PPPPPPPPP 805
           PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 778 PPPPPPPPP 804
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = +1

Query: 736 PPPXXXKKXXXXXXPPPPPPP--PP 804
           PP    K+      PPPPPPP  PP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPP 248


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 733  PPPPXXXKKXXXXXXPPPPPPPP 801
            P  P           PPPPPPPP
Sbjct: 1080 PSAPVANNVSKPSAVPPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 782  PPPPPPPP 805
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 778 PPPPPPPP 801
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 782 PPPPPPPP 805
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 825 PPPPXXXGGGGGGGGG 778
           PPPP   GG G G GG
Sbjct: 76  PPPPGAEGGPGAGFGG 91



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 824 PPPPXXXGGGGGGGGG 777
           PPPP   GG G G GG
Sbjct: 76  PPPPGAEGGPGAGFGG 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,355
Number of Sequences: 5004
Number of extensions: 28265
Number of successful extensions: 498
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 557214894
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)