Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_M21
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.2  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 315 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 217
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -1

Query: 714 PPTPXXXPHPXAPPPXP 664
           PP P   P P  PP  P
Sbjct: 39  PPNPSQGPPPGGPPGAP 55



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -3

Query: 793 PXPPTHXHPPXAXXKXXPXPTXPGPPP 713
           P P  H  P        P P+  GPPP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPS-QGPPP 48


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 803 DXAPXPXHPXPPPXS 759
           D  P P  P PPP S
Sbjct: 336 DTPPKPAPPPPPPSS 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,626
Number of Sequences: 438
Number of extensions: 2884
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)