Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_M20
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    29   1.0  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   5.5  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   7.2  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   7.2  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   7.2  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    25   9.6  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   9.6  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 606 SVGGGAXPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 463
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 558  DKSLHQLRTXMHHHPPNQERAVNLSILPV 644
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 55  YGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 183
           YG     +T+S  SS+V  P  P    P  +    + N+S+ S
Sbjct: 321 YGIDSNLYTNSNSSSIVQNPLQPARTGPAAINYNYTTNYSVSS 363


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 30  LMILPQVPLRKPCYDFYFL*MIKFGQLP 113
           L++  ++ L K  + +YF   +KFGQLP
Sbjct: 337 LVLAGELELAKKMHLYYFSIYLKFGQLP 364


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 592 TTTHRIKKELLICQSFRCPGLVRFPVLSQIKP 687
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 693 STPGGXPSVNSFKFQLATILPPESKFWXP 779
           S+P   P  +S  F+L+   PP SKF  P
Sbjct: 69  SSPLAEPYESSSSFRLSLSSPPSSKFGGP 97


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 790 RQXPGXQNFDSGGSMVAS*NLKELTE 713
           R  PG +N ++GG+   S  ++EL+E
Sbjct: 120 RSLPGFKNIENGGNRDTSSRIEELSE 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,313
Number of Sequences: 5004
Number of extensions: 65417
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)