Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_M18
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    37   0.004
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.11 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.25 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   0.47 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 20/48 (41%), Positives = 20/48 (41%)
 Frame = +1

Query: 583 PXPXPXPXPPXAXXXXXPPXXPLSXXXAXXXPAPPXPXXXXXPXPAVS 726
           P P P P PP A     PP  P     A   P PP P     P PAVS
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP-----PPPAVS 786



 Score = 23.4 bits (48), Expect(2) = 1.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 456 PPPPPPG 436
           PPPPPPG
Sbjct: 763 PPPPPPG 769



 Score = 23.0 bits (47), Expect(2) = 1.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 462 GXPPPPPP 439
           G PPPPPP
Sbjct: 760 GPPPPPPP 767


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
 Frame = +1

Query: 568  PAGGXPXPXPXPXPPXAXXXXXPPXXPLSXXXAXXXPAP------PXPXXXXXPXPAVS- 726
            P+G  P P P    P        P  P     A   PAP      P P     P PA S 
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176

Query: 727  -XPTXXXPXXXGPXLPP 774
              P    P    P +PP
Sbjct: 1177 GIPPVPKPAAGVPPVPP 1193



 Score = 31.5 bits (68), Expect = 0.14
 Identities = 19/69 (27%), Positives = 22/69 (31%)
 Frame = +1

Query: 568  PAGGXPXPXPXPXPPXAXXXXXPPXXPLSXXXAXXXPAPPXPXXXXXPXPAVSXPTXXXP 747
            P+G  P P P   PP        P  P         PAP        P P+V+ P    P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP--SGAPPVPKPSVAAPPVPVP 1136

Query: 748  XXXGPXLPP 774
                P   P
Sbjct: 1137 SGAPPVPKP 1145



 Score = 30.7 bits (66), Expect = 0.25
 Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
 Frame = +1

Query: 568  PAGGXPXPXPX-PXPPXAXXXXXPPXXPLSXXXAXXXPAPPXPXXXXXPXPAVSXPTXXX 744
            P+G  P P P    PP        P  P+    A   P PP       P P+V  P    
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIP--PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212

Query: 745  PXXXGPXLPP 774
            P    P   P
Sbjct: 1213 PSTAPPVPTP 1222



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
 Frame = +1

Query: 568  PAGGXPXPXPXPXPPXAXXXXXPPXX--PLSXXXAXXXPAPPXPXXXXXPXPAVSXPTXX 741
            P+ G P   P P P        PP    P+        P PP       P P+   P   
Sbjct: 1174 PSSGIP---PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230

Query: 742  XPXXXGPXLP 771
             P    P +P
Sbjct: 1231 VPTAKAPPVP 1240



 Score = 29.5 bits (63), Expect = 0.58
 Identities = 20/68 (29%), Positives = 24/68 (35%)
 Frame = +1

Query: 571  AGGXPXPXPXPXPPXAXXXXXPPXXPLSXXXAXXXPAPPXPXXXXXPXPAVSXPTXXXPX 750
            A   P P P   PP       PP  P S   A   P PP P       P++  P+   P 
Sbjct: 1029 ADAPPIPVPSTAPPVPIPTSTPP-VPKSSSGAPSAP-PPVP-APSSEIPSIPAPSGAPPV 1085

Query: 751  XXGPXLPP 774
                 +PP
Sbjct: 1086 PAPSGIPP 1093



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 20/75 (26%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
 Frame = +1

Query: 568  PAGGXPXPXPX------PXPPXAXXXXXPPXXPLSXXXAXXXPAPPXPXXXXXPXPAVS- 726
            P+   P P P       P P  A     P   P     +   P  P P     P PA S 
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119

Query: 727  XPTXXXPXXXGPXLP 771
             P    P    P +P
Sbjct: 1120 APPVPKPSVAAPPVP 1134


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 24/81 (29%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
 Frame = +1

Query: 571 AGGXPXPX-----PXPXPPXAXXXXXPPXXPLSXXXAXXXPAPPXPXXXXXPXPAV---- 723
           AG  P P      P P PP +         PLS   A   P  P P       PA+    
Sbjct: 348 AGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLG 407

Query: 724 -SXPTXXXPXXXGPXLPPXLP 783
            +  T   P    P LPP  P
Sbjct: 408 NASRTSTPPVPTPPSLPPSAP 428



 Score = 29.9 bits (64), Expect = 0.44
 Identities = 18/66 (27%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
 Frame = +1

Query: 589 PXPXPXPPXAXXXXXPPXXPLSXXXAXXXPAPP-XPXXXXXPXPAVSXPTXXXPXXXGPX 765
           P P P  P       PP    S       P PP  P       P  + P+        P 
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448

Query: 766 LPPXLP 783
           LPP  P
Sbjct: 449 LPPSAP 454



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 21/67 (31%), Positives = 22/67 (32%)
 Frame = +1

Query: 583 PXPXPXPXPPXAXXXXXPPXXPLSXXXAXXXPAPPXPXXXXXPXPAVSXPTXXXPXXXGP 762
           P P P   PP A     PP  P S   +    AP  P     P  A   P         P
Sbjct: 416 PVPTPPSLPPSA-----PPSLPPSAPPSLPMGAPAAP---PLPPSAPIAPPLPAGMPAAP 467

Query: 763 XLPPXLP 783
            LPP  P
Sbjct: 468 PLPPAAP 474


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect(2) = 0.47
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 456 PPPPPPGXKXXXKKK 412
           PPPPPPG     K K
Sbjct: 25  PPPPPPGYVKKRKNK 39



 Score = 23.0 bits (47), Expect(2) = 0.47
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 462 GXPPPPPP 439
           G PPPPPP
Sbjct: 7   GNPPPPPP 14


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/66 (24%), Positives = 17/66 (25%)
 Frame = +1

Query: 574  GGXPXPXPXPXPPXAXXXXXPPXXPLSXXXAXXXPAPPXPXXXXXPXPAVSXPTXXXPXX 753
            GG     P   PP       PP              PP P     P    S P    P  
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738

Query: 754  XGPXLP 771
              P +P
Sbjct: 1739 SAPSVP 1744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,123
Number of Sequences: 5004
Number of extensions: 17849
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)