Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_M14
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 32 0.48
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 32 0.64
06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999... 29 3.4
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 3.4
12_02_1174 - 26696869-26698191 29 4.5
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.5
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 5.9
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 29 5.9
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 32.3 bits (70), Expect = 0.48
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = -3
Query: 714 HQATPPLXXRXHQPDHQSPDSIHQPPPDLTSI---SINPLTPX*KEFAPGLKPPXSSEAP 544
H+ TPP + P ++ + PPP+ +S + +P E +P PP +++P
Sbjct: 828 HEGTPPSPVKSSSPPPEA--HVSSPPPEKSSSPPPEAHVSSPPPPEKSP---PPPETKSP 882
Query: 543 SAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTHTP 424
LTP +G SPP S S+ T TP
Sbjct: 883 PT-LTPEISPPPEGKSPPSHTPESSSPPSKESEPPPTPTP 921
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 31.9 bits (69), Expect = 0.64
Identities = 20/68 (29%), Positives = 27/68 (39%)
Frame = -3
Query: 687 RXHQPDHQSPDSIHQPPPDLTSISINPLTPX*KEFAPGLKPPXSSEAPSAYLTPSSLGMX 508
R H+ P + PPP SIS P P AP P + + PS+ PS
Sbjct: 84 RHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPPPAPAPPPTPTPKFPSSSANPSPPDAY 143
Query: 507 KGVSPPYF 484
+ P+F
Sbjct: 144 PFTNYPFF 151
>06_01_1169 +
9996068-9996265,9996356-9998589,9998675-9998926,
9999007-9999117,9999207-9999288,9999563-9999754
Length = 1022
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -3
Query: 702 PPLXXRXHQPDHQSPDSIHQPP-PDLTSISINPLTPX*KEFAPGLKPPXSSEAPS 541
PPL QP P QPP P + +P +P K+ AP PP + P+
Sbjct: 586 PPLRSPPRQPT-PPPSPSQQPPLPTPQPVQASPTSPT-KQHAPPAPPPVQTSPPT 638
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -1
Query: 239 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVCVKS*SL 60
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 59 ILHSF 45
+LHSF
Sbjct: 1408 LLHSF 1412
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/71 (30%), Positives = 25/71 (35%)
Frame = -3
Query: 702 PPLXXRXHQPDHQSPDSIHQPPPDLTSISINPLTPX*KEFAPGLKPPXSSEAPSAYLTPS 523
PP +P H+ P QPPP L P P P +KPP P P
Sbjct: 128 PPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPP-PPRPPSVKPPVVQPKPQ---PPP 183
Query: 522 SLGMXKGVSPP 490
SL PP
Sbjct: 184 SLQPPSPPPPP 194
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 80 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 181
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = -1
Query: 470 NHKLRALLVVIPRILRSPPPTHPLIEDVVMAANQAIIDYKVKIADNNLVTHKELALKVSS 291
++ L+A L+ + ++ PP HPLI +A+ ++ + A +LV+ +S
Sbjct: 125 DYVLKASLLHLHHLIDPPPRHHPLITSTSSSAHHSLPPHAAAAAHVSLVSSSSTDANANS 184
Query: 290 II 285
++
Sbjct: 185 VV 186
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/64 (26%), Positives = 23/64 (35%)
Frame = -3
Query: 711 QATPPLXXRXHQPDHQSPDSIHQPPPDLTSISINPLTPX*KEFAPGLKPPXSSEAPSAYL 532
Q PP P + P S+ PPP S + P P PP S P
Sbjct: 49 QPPPPQAMYQAHPQYPMPGSLPPPPPRPPSFAPENALPPSSPPPPSPPPPPPSSPPPVPP 108
Query: 531 TPSS 520
+P++
Sbjct: 109 SPTA 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,418,169
Number of Sequences: 37544
Number of extensions: 430490
Number of successful extensions: 1276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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