Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_M14
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    31   0.76 
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    29   5.3  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 23/76 (30%), Positives = 29/76 (38%)
 Frame = -3

Query: 708 ATPPLXXRXHQPDHQSPDSIHQPPPDLTSISINPLTPX*KEFAPGLKPPXSSEAPSAYLT 529
           A+PP+      P  Q       PPP + S S    TP  ++   G  PP     P     
Sbjct: 245 ASPPVQEFAPPPPQQQQQQFQAPPPPMASHSSISSTPVQQQ---GFAPPQQFGGPPPSGP 301

Query: 528 PSSLGMXKGVSPPYFQ 481
           PS  G   G +PP  Q
Sbjct: 302 PSEYG---GYAPPQQQ 314



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 26/81 (32%), Positives = 31/81 (38%)
 Frame = -3

Query: 732 GGXALXHQATPPLXXRXHQPDHQSPDSIHQPPPDLTSISINPLTPX*KEFAPGLKPPXSS 553
           GG        PP   + H P   SP S   PPP ++S   N   P  +   PG   P   
Sbjct: 341 GGPPQGSFGAPP-PQQFHAP---SPQSFGGPPPPVSSAPGN-FAPPPQSGPPGAFAP--- 392

Query: 552 EAPSAYLTPSSLGMXKGVSPP 490
             PSA+  P   G   G  PP
Sbjct: 393 -PPSAFGAPQGPGGPGGYGPP 412


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
 Frame = -3

Query: 678 QPDHQSPDSIHQPPPDLTSISINPL--------TPX*KEFA-PGLKPPXSSEAPSAYLTP 526
           QP H    S   PPPD   IS NP+        TP    +  P L PP ++ +P   L P
Sbjct: 651 QPTHYIVPSQSSPPPDPYVIS-NPIPTLSPTAGTPSFNIYPYPSLPPPTTTISPLPTLLP 709

Query: 525 SSLGMXKGVSPPYFQVNDESQASRLISRHST 433
            ++      SPP    N++S  SR I   +T
Sbjct: 710 PNISYV--TSPP---DNNDSPCSRSIYGDAT 735


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,058,586
Number of Sequences: 27780
Number of extensions: 321638
Number of successful extensions: 937
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)