Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_M13
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.001
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.62
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.3
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 5.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -3
Query: 578 PPPPPXXGGGXQNXPPPXXGXGGDXXXXPPPXXXGGGGGXFF 453
PPP P GG PPP G PPP GG ++
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +1
Query: 463 PPPPPXXXGGGXXXXSPPXP--XXGGGLFCXPPP 558
PPPPP G G PP P GG + P P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +1
Query: 463 PPPPPXXXGGGXXXXSPPXPXXGGGLFCXPPPXXGGGGG 579
P PPP GG PP G G PPP G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Frame = -3
Query: 578 PPPPPXXGGGXQNXPPPXX---GXGGDXXXXPPP 486
PPPPP G PPP GG P P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +3
Query: 462 PPPPPAXXGGGXXXXVXPXPXXGGG 536
PPPPP G G P P G
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAG 788
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.62
Identities = 12/39 (30%), Positives = 13/39 (33%)
Frame = -3
Query: 578 PPPPPXXGGGXQNXPPPXXGXGGDXXXXPPPXXXGGGGG 462
PPPPP + PP G PPP G
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 234 GGPPXXSPPPPXFFKXXXXXXPPLSPGXFXK 142
G PP PPPP F+ PP PG K
Sbjct: 7 GNPPP--PPPPPGFEPPSQPPPPPPPGYVKK 35
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 578 PPPPPXXGGGXQNXPPPXXGXG 513
PPPPP G + PPP G
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPG 31
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 578 PPPPPXXGGGXQNXPPPXXGXGGDXXXXPP 489
PPPP G PPP G+ PP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPP 237
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 578 PPPPPXXGGGXQNXPPPXXGXGGDXXXXPP 489
PPPP G PPP G+ PP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 578 PPPPPXXGGGXQNXPPPXXGXGGDXXXXPP 489
PPPP G PPP G+ PP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 578 PPPPPXXGGGXQNXPPPXXGXGGDXXXXPP 489
PPPP G PPP G+ PP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 578 PPPPPXXGGGXQNXPPPXXGXGGDXXXXPP 489
PPPP G PPP G+ PP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 578 PPPPPXXGGGXQNXPPPXXGXGGDXXXXPP 489
PPPP G PPP G+ PP
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 578 PPPPPXXGGGXQNXPPPXXGXGGDXXXXPP 489
PPPP G PPP G+ PP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 578 PPPPPXXGGGXQNXPPPXXGXGGDXXXXPP 489
PPPP G PPP G+ PP
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 578 PPPPPXXGGGXQNXPPPXXGXGGDXXXXPP 489
PPPP G PPP G+ PP
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.152 0.533
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,409
Number of Sequences: 5004
Number of extensions: 16273
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -