Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_M08
         (821 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    30   2.3  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    30   2.3  
U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical p...    28   7.0  

>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
           protein 4 protein.
          Length = 2104

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 28/116 (24%), Positives = 44/116 (37%)
 Frame = +2

Query: 140 TELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECENATSKVTLFRASRLSGLHSEH 319
           TEL+ D+  +  RV     S  +R   GL     R   +NA   +        +G   EH
Sbjct: 465 TELF-DIAPQKTRVSVVQYSDQIRHEFGLDNYSDRKSLQNAIRNIEYLTGLTRTGAAIEH 523

Query: 320 IXXXXXXXXXXXRGVQA*SRGW*LRTTGRSAECMNQMSETAVPLVLSSITIATTSH 487
           +           R V   SR   + T GRS + + + S+ A    +    +  T+H
Sbjct: 524 VANEAFSERRGARPVGQVSRVAIVITDGRSQDNVTRPSDNARRQDIQLFAVGVTNH 579


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
           matrix receptor MUP-4 protein.
          Length = 2104

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 28/116 (24%), Positives = 44/116 (37%)
 Frame = +2

Query: 140 TELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECENATSKVTLFRASRLSGLHSEH 319
           TEL+ D+  +  RV     S  +R   GL     R   +NA   +        +G   EH
Sbjct: 465 TELF-DIAPQKTRVSVVQYSDQIRHEFGLDNYSDRKSLQNAIRNIEYLTGLTRTGAAIEH 523

Query: 320 IXXXXXXXXXXXRGVQA*SRGW*LRTTGRSAECMNQMSETAVPLVLSSITIATTSH 487
           +           R V   SR   + T GRS + + + S+ A    +    +  T+H
Sbjct: 524 VANEAFSERRGARPVGQVSRVAIVITDGRSQDNVTRPSDNARRQDIQLFAVGVTNH 579


>U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical
           protein K09H11.1 protein.
          Length = 985

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 147 YIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLNAKTRLV 269
           YIRT     +VLRKKP  S+       D   +++NA   LV
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNALQGLV 304


>U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical
           protein ZK1248.10 protein.
          Length = 908

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 125 EPRHRTELYPDLRSRDARVKKKTDSI--DLRDPNGLRRRVSRFECENATSKV 274
           E  +R +L   +  R + +    + +  D+  P G+   VS  +CE AT KV
Sbjct: 395 EEENREDLLGSISERSSNIPADANGLVSDVEVPEGILVDVSSVDCEEATRKV 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,298,702
Number of Sequences: 27780
Number of extensions: 378077
Number of successful extensions: 1124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)