Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_M07
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   145   6e-36
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   145   8e-36
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    34   0.027
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.5  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.3  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  145 bits (352), Expect = 6e-36
 Identities = 76/141 (53%), Positives = 88/141 (62%)
 Frame = -2

Query: 748 VIXXRPXGQRAVXNFPAHTGWYAYCGTFHTRCFNKPDPSCIP*TSXLDCIDPAQDHQPIT 569
           VI  RP G RAV  F AHTG  A  G F    F             +   DP  D Q I 
Sbjct: 79  VISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIK 138

Query: 568 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 389
           EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W
Sbjct: 139 EASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAW 198

Query: 388 DVVVDLFFYRDPEESEKDEQQ 326
           +V+ DL+FYRDPEE E++E+Q
Sbjct: 199 EVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  145 bits (351), Expect = 8e-36
 Identities = 76/143 (53%), Positives = 88/143 (61%)
 Frame = -2

Query: 748 VIXXRPXGQRAVXNFPAHTGWYAYCGTFHTRCFNKPDPSCIP*TSXLDCIDPAQDHQPIT 569
           V+  R  G RAV  F AHTG  A  G F    F             +   DP  D Q I 
Sbjct: 78  VVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIK 137

Query: 568 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 389
           EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   W
Sbjct: 138 EASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPW 197

Query: 388 DVVVDLFFYRDPEESEKDEQQAK 320
           DV+ DL+FYRDPEE E++E+  K
Sbjct: 198 DVMPDLYFYRDPEEVEREEEAKK 220


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 601 IDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 434
           ++P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 186 LNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 571 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 461
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 463 IGLMWWLLAREVLRLRGVLPRDQRWD 386
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 408 FPVTSAGML--WLICSSTVTLKKVKRM 334
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 639 IQAAFRELRXLIVLTLHKTINPLLKLHMSTFL*LLCATQTP-H*DLWTLLSHATPSLPTL 463
           ++A FR +      +L+K + PLL   +  F  LL + +TP   DL+T L    P   +L
Sbjct: 721 LRALFRGIGGGRFESLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSL 780

Query: 462 LV 457
           L+
Sbjct: 781 LL 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,253
Number of Sequences: 5004
Number of extensions: 53663
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)