Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_M05
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U43283-4|AAU05548.1|  311|Caenorhabditis elegans Dehydrogenases,...    36   0.034
U43283-7|AAC69018.1|  537|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    28   9.0  

>U43283-4|AAU05548.1|  311|Caenorhabditis elegans Dehydrogenases,
           short chain protein30 protein.
          Length = 311

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 613 ESIKPQAPLLVVPFRQFFKFQLCNHTPPGSQNLWXPEAXRRAIVIT 750
           E +K  AP LVVP   +  ++L N   PG+ NL   +   + +VIT
Sbjct: 8   EMLKEWAPALVVPLSLYVAYKLLNRIIPGAHNLPKLDVKNKVVVIT 53


>U43283-7|AAC69018.1|  537|Caenorhabditis elegans Hypothetical
           protein T25G12.2 protein.
          Length = 537

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 613 ESIKPQAPLLVVPFRQFFKFQLCNHTPPGSQNLWXPEAXRRAIVIT 750
           E +K  AP+LVV    +  + L N   PG+ NL       + +VIT
Sbjct: 39  EVLKNCAPVLVVTICLYLAYNLLNKAIPGAHNLSKLNVKNKIVVIT 84


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
 Frame = +2

Query: 212 DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 307
           ++C+  +PAR+   G PGP GQ    GE  H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,240,638
Number of Sequences: 27780
Number of extensions: 397671
Number of successful extensions: 953
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)