Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_M04
(827 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 33 0.33
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 25 0.55
AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase assoc... 25 0.59
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.8
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 28 7.1
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Frame = -3
Query: 450 PPXXXXKGGXPPPPPXXFFFKXKXRXGG-----GGKXPXXXPPPXXFFF 319
PP G PPPPP K G GG P PPP F F
Sbjct: 541 PPPVGMANGGPPPPPPLPLDLLKGAVAGLKSVPGGPPPPPPPPPPSFMF 589
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
protein homologprotein 1, isoform a protein.
Length = 1256
Score = 25.4 bits (53), Expect(2) = 0.55
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 430 GGXPPPPPP 404
GG PPPPPP
Sbjct: 1010 GGPPPPPPP 1018
Score = 25.0 bits (52), Expect(2) = 0.55
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 421 PPPPPPXXFF 392
PPPPPP FF
Sbjct: 1015 PPPPPPADFF 1024
>AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform b protein.
Length = 495
Score = 25.4 bits (53), Expect(2) = 0.59
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 430 GGXPPPPPP 404
GG PPPPPP
Sbjct: 249 GGPPPPPPP 257
Score = 25.0 bits (52), Expect(2) = 0.59
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 421 PPPPPPXXFF 392
PPPPPP FF
Sbjct: 254 PPPPPPADFF 263
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 450 PPXXXXKGGXPPPPPXXFF 394
PP KGG PPPPP F
Sbjct: 775 PPPGGFKGGPPPPPPPGMF 793
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -3
Query: 450 PPXXXXKGGXPPPPPXXFFFKXKXRXGGGGKXPXXXPPPXXF 325
PP GG PPPPP GG P PPP F
Sbjct: 759 PPPPPPPGGCPPPPP-------PPPPGGFKGGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 450 PPXXXXKGGXPPPPPXXFF 394
PP KGG PPPPP F
Sbjct: 775 PPPGGFKGGPPPPPPPGMF 793
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -3
Query: 450 PPXXXXKGGXPPPPPXXFFFKXKXRXGGGGKXPXXXPPPXXF 325
PP GG PPPPP GG P PPP F
Sbjct: 759 PPPPPPPGGCPPPPP-------PPPPGGFKGGPPPPPPPGMF 793
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 450 PPXXXXKGGXPPPPPXXFF 394
PP KGG PPPPP F
Sbjct: 358 PPPGGFKGGPPPPPPPGMF 376
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -3
Query: 450 PPXXXXKGGXPPPPPXXFFFKXKXRXGGGGKXPXXXPPPXXF 325
PP GG PPPPP GG P PPP F
Sbjct: 342 PPPPPPPGGCPPPPP-------PPPPGGFKGGPPPPPPPGMF 376
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +3
Query: 336 GGXXXXGXXPPPPPXFXF*KKXXGGGGGG 422
GG G PPPPP GGGGGG
Sbjct: 45 GGGCGGGCAPPPPPPAC--GGGCGGGGGG 71
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +3
Query: 336 GGXXXXGXXPPPPPXFXF*KKXXGGGGGG 422
GG G PPPPP GGGGGG
Sbjct: 102 GGGCGGGCAPPPPPPAC--GGGCGGGGGG 128
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +3
Query: 336 GGXXXXGXXPPPPPXFXF*KKXXGGGGGG 422
GG G PPPPP GGGGGG
Sbjct: 22 GGGGGCGCAPPPPPPAC----GCGGGGGG 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,307,364
Number of Sequences: 27780
Number of extensions: 178510
Number of successful extensions: 1251
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -