Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_M02
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 305 6e-84
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 301 7e-83
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 123 3e-29
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 73 5e-14
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.26
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.2
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.5
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.3
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.7
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 305 bits (748), Expect = 6e-84
Identities = 145/221 (65%), Positives = 164/221 (74%), Gaps = 2/221 (0%)
Frame = -2
Query: 790 PNLHQPEXFIGQIVSSITXSLKFDGALNXDXTRVPD*XWXLTPVSTSHWSRTRQSXXXXX 611
P I Q+VSSIT SL+F G+LN D L P H+ S
Sbjct: 226 PTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQT---NLVPYPRIHFPLVTYSPIVSA 282
Query: 610 PN--HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 437
HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++
Sbjct: 283 AKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSR 342
Query: 436 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 257
RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLM
Sbjct: 343 RTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLM 402
Query: 256 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 134
Y+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 403 YSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 301 bits (739), Expect = 7e-83
Identities = 143/221 (64%), Positives = 164/221 (74%), Gaps = 2/221 (0%)
Frame = -2
Query: 790 PNLHQPEXFIGQIVSSITXSLKFDGALNXDXTRVPD*XWXLTPVSTSHWSRTRQSXXXXX 611
P+ I Q+VSSIT SL+F+G+LN D L P H+ +
Sbjct: 222 PSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQT---NLVPYPRIHFPLVTYAPIVSA 278
Query: 610 PN--HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 437
HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK K
Sbjct: 279 AKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAK 338
Query: 436 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 257
RTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLM
Sbjct: 339 RTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLM 398
Query: 256 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 134
Y+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 399 YSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 123 bits (296), Expect = 3e-29
Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 5/224 (2%)
Frame = -2
Query: 793 APNLHQPEXFIGQIVSSITXSLKFDGALNXDXTRVPD*XWXLTPVSTSHWSRTRQSXXXX 614
+P+ + +++ +T S +F G LN D ++ + P H+ +
Sbjct: 219 SPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAV---NMVPFPRLHFFMVGFAPLAA 275
Query: 613 XPNH--EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 440
+ + +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++T
Sbjct: 276 IGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQT 335
Query: 439 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 260
K + FV+W P + PP DL + + + N+T+I E + RL +F
Sbjct: 336 KNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSA 387
Query: 259 MYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 137
M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 72.9 bits (171), Expect = 5e-14
Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 9/222 (4%)
Frame = -2
Query: 790 PNLHQPEXFIGQIVSSITXSLKFDGALNXDXTRVPD*XWXLTPVSTSHWSRTRQSXXXXX 611
P HQ + ++S+ T +L++ G +N D + L P H+ T +
Sbjct: 223 PTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSI---IASLIPSPRCHFLLTSYTPFTNQ 279
Query: 610 PNHE-----QLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIAT 449
E + +V ++ P NQMV +P + +++ + +G+ P DV+ ++
Sbjct: 280 QVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLR 339
Query: 448 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 269
I+ +R F+ W P +V ++ + P + ++ + ML+N T+IA + R +
Sbjct: 340 IRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQ 394
Query: 268 FDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 152
+D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 395 YDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.26
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 492 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 358
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 580 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 455
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 452 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 595
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 288 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 115
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 114 EPKSTK 97
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.2
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = -3
Query: 597 SFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSS 418
S +P + T+ ++ + +TPV ++ CT TS P T + S P +N +
Sbjct: 417 SSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCT 474
Query: 417 TGVQPVSRSVSTTSHP 370
T S TS P
Sbjct: 475 TSTSIPYTSTPVTSTP 490
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -3
Query: 588 SPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGV 409
+P + T+ ++ + +TPV ++ CT TS P T P S ++ S++
Sbjct: 525 TPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTS 583
Query: 408 QPVSRSVSTTS 376
PV+ + TTS
Sbjct: 584 TPVTTTNCTTS 594
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 456 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 370
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 475 WVRRHHGTAYSKPCTCHDGG 534
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 459 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 364
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,377
Number of Sequences: 5004
Number of extensions: 62419
Number of successful extensions: 234
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -