Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_L24
         (1207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.035
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    30   0.098
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   0.37 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.74 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   6.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   6.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   6.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 957 PPPPPPPPXXXXGGG 913
           PPPPPPPP     GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 29.5 bits (63), Expect(2) = 0.035
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 896 PPPXPPPPPXXXXGG 940
           PPP PPPPP    GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 957 PPPPPPPPXXXXGG 916
           PPPPPPPP     G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 954 PPPPPPPXXXXGGG 913
           PPPPPPP    G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 954 PPPPPPPXXXXGGGG 910
           PPPPPPP      GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 893 PPPPXPPPPPXXXXG 937
           PPPP PPPP     G
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 26.6 bits (56), Expect(2) = 0.22
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 899 PPXPPPPPXXXXGGG 943
           PP PPPPP     GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 23.4 bits (48), Expect(2) = 0.035
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 893 PPPPXPPP 916
           PPPP PPP
Sbjct: 761 PPPPPPPP 768



 Score = 23.4 bits (48), Expect(2) = 0.22
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 896 PPPXPPPP 919
           PPP PPPP
Sbjct: 761 PPPPPPPP 768


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 957 PPPPPPPPXXXXGGGG 910
           PPPPPPPP      GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 29.5 bits (63), Expect(2) = 0.098
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 896 PPPXPPPPPXXXXGGG 943
           PPP PPPPP     GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 893 PPPPXPPPPPXXXXGG 940
           PPPP PPPP     GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 27.1 bits (57), Expect(2) = 0.16
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 954 PPPPPPPXXXXGGGGG 907
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 899 PPXPPPPPXXXXGGGG 946
           PP PPPPP      GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 23.4 bits (48), Expect(2) = 0.16
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 957 PPPPPPPP 934
           P PPPPPP
Sbjct: 905 PTPPPPPP 912



 Score = 21.8 bits (44), Expect(2) = 0.098
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 893 PPPPXPPPPP 922
           P PP PPP P
Sbjct: 905 PTPPPPPPLP 914


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 957 PPPPPPPP 934
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 957 PPPPPPPP 934
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 26.2 bits (55), Expect(2) = 0.37
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 893 PPPPXPPPP 919
           PPPP PPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 896 PPPXPPPPP 922
           PPP PPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 23.0 bits (47), Expect(2) = 0.37
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 896 PPPXPPPPP 922
           P P PPPPP
Sbjct: 236 PAPPPPPPP 244


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 16/56 (28%), Positives = 16/56 (28%)
 Frame = +2

Query: 899  PPXPPPPPXXXXGGGGGGGGXXXXXXXXXPPXPXXXXXXXXXXXXXXXXXXPPXPP 1066
            PP PPPP     G    G G         PP P                  PP PP
Sbjct: 311  PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -2

Query: 954 PPPPPPPXXXXGGGGGXGGGGXXXXXXXXXXXXXPPPPP 838
           PPPPPPP     G    G G              PPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGS------SNSSLPPPPPPP 343


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 957 PPPPPPPP 934
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 23.4 bits (48), Expect(2) = 2.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 893 PPPPXPPP 916
           PPPP PPP
Sbjct: 9   PPPPPPPP 16



 Score = 23.0 bits (47), Expect(2) = 2.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 896 PPPXPPPPP 922
           PP  PPPPP
Sbjct: 20  PPSQPPPPP 28


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 958 PPPPPPPP 935
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 957 PPPPPPPP 934
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314



 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 893 PPPPXPPPP 919
           PPPP PPPP
Sbjct: 306 PPPPPPPPP 314



 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 896 PPPXPPPPP 922
           PPP PPPPP
Sbjct: 306 PPPPPPPPP 314


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 958  PPPPPPPP 935
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 958 PPPPPPPP 935
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,227
Number of Sequences: 5004
Number of extensions: 29859
Number of successful extensions: 458
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 651443514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)