Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_L22
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.0  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   4.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.2  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +1

Query: 598 FFFFFFXXXKXFXF-FFXSP--PXXXXFFFFFFFF 693
           FFFFFF   + F    F  P       FF FFF+F
Sbjct: 80  FFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYF 114



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +3

Query: 597 FFFFFFXXXKKXXFFFXLPP---PXXXFFFFFFFF 692
           FFFFFF   ++      + P       FF FFF+F
Sbjct: 80  FFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYF 114


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 547 FXRKKXXFFFXKKKXXXFFF-FFFXXXKXFXFFF 645
           F  K+  +FF K +   FFF FFF     F F F
Sbjct: 54  FYPKRNWWFFIKMRYLSFFFEFFFLFSFAFAFDF 87


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -2

Query: 261 PPXXVPPKKXKXPPPXGXLNXGPPAP 184
           PP  +       PPP G    GPP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,896
Number of Sequences: 5004
Number of extensions: 26808
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)