Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_L21
         (1008 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   0.32 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.34 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.34 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   0.62 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    23   7.6  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   9.7  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect(2) = 0.32
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 614 GGXPPPPPP 588
           GG PPPPPP
Sbjct: 303 GGLPPPPPP 311



 Score = 23.8 bits (49), Expect(2) = 0.32
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 605 PPPPPPXXXFXK 570
           PPPPPP   F K
Sbjct: 309 PPPPPPSNDFWK 320


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 677 PXAPPPXXXGGGXHPRPXLXXGGXPPPPP 591
           P  PPP     G  P P       PPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 29.5 bits (63), Expect = 0.78
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = +3

Query: 765 PXXPPXXTXLXXPPXPPXPAXXPXXLXAPPVXXVVXPAXXPAXRAXXPLVSVA 923
           P  PP       P  PP PA  P     PP      PA  PA  A  P+ S+A
Sbjct: 444 PAAPPLPPSA--PIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAA--PVASIA 492


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 677 PXAPPPXXXGGGXHPRPXLXXGGXPPPPPP 588
           P  PP    GG   P P     G  PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 30.7 bits (66), Expect = 0.34
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = -2

Query: 668 PPPXXXGGGXHPRPX---LXXGGXPPPPPP 588
           PPP    GG  P P    +   G PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.2 bits (50), Expect(2) = 0.62
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 611 GXPPPPPPXXXF 576
           G PPPPPP   F
Sbjct: 7   GNPPPPPPPPGF 18



 Score = 23.8 bits (49), Expect(2) = 0.62
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 623 LXXGGXPPPPPP 588
           L  G  PPPPPP
Sbjct: 4   LPPGNPPPPPPP 15


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 23.0 bits (47), Expect(2) = 7.6
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = +1

Query: 592 GGGGGXPPXFXXG-RGXXPPPXXXGGGAXG 678
           GG GG P  F  G  G    P   GGG  G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253



 Score = 21.4 bits (43), Expect(2) = 7.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 589 GGGGGGXPP 615
           GGG GG PP
Sbjct: 194 GGGSGGPPP 202


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -2

Query: 677  PXAPPPXXXGGGXHPRPXLXXGGXPPPPPP 588
            P  PP         P P L     PP PPP
Sbjct: 1019 PLLPPRSGSSSSGVPAPNLTPVNVPPTPPP 1048


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,332
Number of Sequences: 5004
Number of extensions: 17703
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 523262732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)