Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_L15
         (946 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.034
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.14 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   8.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 689 PPPXGXVXXXXPPPPPPXGXXXXKKKK 769
           PPP G      PPPPPP G    +K K
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 33.5 bits (73), Expect = 0.044
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 688 PPPXXGXXXXXPPPPPPPXXXXXKKKKK 771
           PPP  G      PPPPPP     K+K K
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 30.7 bits (66), Expect = 0.31
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 687 PPPXXGXXXXXXPPPPPPXG 746
           PPP  G      PPPPPP G
Sbjct: 12  PPPPPGFEPPSQPPPPPPPG 31



 Score = 30.3 bits (65), Expect = 0.41
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +1

Query: 688 PPPXXGXXXXXPP--PPPPPXXXXXKKKKKK 774
           PPP        PP  PPPPP     KK+K K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 688 PPPXXGXXXXXPPPPPPPXXXXXKKKKKKK 777
           PPP        P  PPPP      KK+K K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 688 PPPXXGXXXXXPPPPPPP 741
           PPP  G     PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 29.5 bits (63), Expect = 0.72
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 688 PPPXXGXXXXXPPPPPPP 741
           PPP        PPPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 687 PPPXXGXXXXXXPPPPPP 740
           PPP  G      PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 688 PPPXXGXXXXXPPPPPPP 741
           PPP        PPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 692 PPXGXVXXXXPPPPPPXG 745
           PP   +    PPPPPP G
Sbjct: 752 PPPAPIMGGPPPPPPPPG 769



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 689 PPPXGXVXXXXPPPPPP 739
           PPP   +    PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 687 PPPXXGXXXXXXPPPPPP 740
           PPP         PPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 688 PPPXXGXXXXXPPPPPPP 741
           P P        PPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 721  PPPPPPPXXXXXKK 762
            PPPPPPP     KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,721
Number of Sequences: 5004
Number of extensions: 24867
Number of successful extensions: 210
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)