Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_L09
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical pr... 31 1.00
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 30 2.3
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 30 2.3
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 30 2.3
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 30 2.3
Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.3
U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical pr... 28 9.3
>Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical
protein ZK512.8 protein.
Length = 171
Score = 31.1 bits (67), Expect = 1.00
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +1
Query: 157 SALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSKTSAVSVRQ- 333
S L S+P + DE+ L R + D HP + + +P + E S TSA S
Sbjct: 46 STHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSNSSL 105
Query: 334 PVGPPRRCRWCXGIP 378
PV P G+P
Sbjct: 106 PVRSPAIMTLMGGVP 120
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 29.9 bits (64), Expect = 2.3
Identities = 38/128 (29%), Positives = 49/128 (38%)
Frame = +1
Query: 229 STLQPDGAAHPKDAQPTEPSRRIEGSKTSAVSVRQPVGPPRRCRWCXGIPRWXRTSLPGR 408
+T P + + P P RR G+ S+ S R+PV R G P P
Sbjct: 293 TTSGPPSRLRGRMSHPMGPPRRSSGAPPSSASNRRPVESSSR-----GPP-------PPP 340
Query: 409 DAIHRRPVALITPRQRARVLVARRTASPPQVAP*PSRGGGRHLQGAGTYGRIPASGPRLD 588
+ RR + R R RR V SRGGG +G G YGR A +
Sbjct: 341 SSSSRRDYSHQGDRNDDRFENHRRG-----VIRGASRGGGTVTRGTGGYGRTGAIRGGVR 395
Query: 589 GDGSVRKG 612
G G+ R G
Sbjct: 396 GSGAPRYG 403
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 29.9 bits (64), Expect = 2.3
Identities = 38/128 (29%), Positives = 49/128 (38%)
Frame = +1
Query: 229 STLQPDGAAHPKDAQPTEPSRRIEGSKTSAVSVRQPVGPPRRCRWCXGIPRWXRTSLPGR 408
+T P + + P P RR G+ S+ S R+PV R G P P
Sbjct: 293 TTSGPPSRLRGRMSHPMGPPRRSSGAPPSSASNRRPVESSSR-----GPP-------PPP 340
Query: 409 DAIHRRPVALITPRQRARVLVARRTASPPQVAP*PSRGGGRHLQGAGTYGRIPASGPRLD 588
+ RR + R R RR V SRGGG +G G YGR A +
Sbjct: 341 SSSSRRDYSHQGDRNDDRFENHRRG-----VIRGASRGGGTVTRGTGGYGRTGAIRGGVR 395
Query: 589 GDGSVRKG 612
G G+ R G
Sbjct: 396 GSGAPRYG 403
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 152 SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 51
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 152 SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 51
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1337 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1370
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 152 SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 51
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical
protein M195.3 protein.
Length = 687
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 324 GTAARRAAQTVPLVXRNTPLXQNQPAGSGRDTPSTGRSNHSTA 452
GT A + + + TPL + + R+ PSTGR STA
Sbjct: 529 GTGAPKRSNGPAFNNQITPLAVSSTVSTARNGPSTGRRTESTA 571
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -3
Query: 623 GRLFPFRTDPSPSSRGPEAGIRPYVPAPCRWRPPPREGQG 504
G +P P P R P AG Y P P P P G G
Sbjct: 340 GMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHG 379
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -3
Query: 623 GRLFPFRTDPSPSSRGPEAGIRPYVPAPCRWRPPPREGQG 504
G +P P P R P AG Y P P P P G G
Sbjct: 350 GMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHG 389
>U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical
protein F11G11.5 protein.
Length = 223
Score = 27.9 bits (59), Expect = 9.3
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Frame = +1
Query: 172 PTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRR------------IEGSKTS 315
P PL P + G + S+ QP + P+ QPT PSR I+ S
Sbjct: 7 PVKQPLPDSPPTDEG-MSSSSAQPSAPSAPEQ-QPTSPSRPPPPAGFVYPSTDIQNSSEV 64
Query: 316 AVSVRQPVGPP 348
VS P GPP
Sbjct: 65 HVSAPVPAGPP 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,294
Number of Sequences: 27780
Number of extensions: 353952
Number of successful extensions: 1464
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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