Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_L08
         (803 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021407-1|AAX33555.1|  720|Drosophila melanogaster LD06749p pro...    29   9.8  
AF162774-1|AAF68853.2|  720|Drosophila melanogaster Nopp140-like...    29   9.8  
AE014296-3628|AAF51788.3|  720|Drosophila melanogaster CG7421-PA...    29   9.8  

>BT021407-1|AAX33555.1|  720|Drosophila melanogaster LD06749p
           protein.
          Length = 720

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 608 GRXXGXXGXGXXXGRGGXGGG 546
           GR  G  G G   GRGG GGG
Sbjct: 674 GRGGGGRGGGGFGGRGGRGGG 694


>AF162774-1|AAF68853.2|  720|Drosophila melanogaster Nopp140-like
           nucleolar protein protein.
          Length = 720

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 608 GRXXGXXGXGXXXGRGGXGGG 546
           GR  G  G G   GRGG GGG
Sbjct: 674 GRGGGGRGGGGFGGRGGRGGG 694


>AE014296-3628|AAF51788.3|  720|Drosophila melanogaster CG7421-PA,
           isoform A protein.
          Length = 720

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 608 GRXXGXXGXGXXXGRGGXGGG 546
           GR  G  G G   GRGG GGG
Sbjct: 674 GRGGGGRGGGGFGGRGGRGGG 694


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,951,589
Number of Sequences: 53049
Number of extensions: 218261
Number of successful extensions: 2844
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2512
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)