Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_L08
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   5.1  
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   9.0  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 517 PXXPXXXXXXPPPXPPLPXXXPXPXXP 597
           P  P      PPP PP P   P P  P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPP 290


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 517 PXXPXXXXXXPPPXPPLPXXXPXPXXP 597
           P  P      PPP PP P   P P  P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPP 300


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -1

Query: 608 GRXXGXXGXGXXXGRGGXGGGXXXXXXGXXG 516
           G   G  G G   GRGG GGG      G  G
Sbjct: 46  GASAGGTGGGRGGGRGGSGGGRGGGSGGGRG 76


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 526 PXXXXXXPPPXPPLPXXXPXPXXP 597
           P      PPP PP+P   P P  P
Sbjct: 66  PPPPICPPPPPPPMPCPPPPPPMP 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,957,974
Number of Sequences: 27780
Number of extensions: 91411
Number of successful extensions: 1069
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)