Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_L04
         (991 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   7.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 691 GXGXPPPPPPP 723
           G G PPPPPPP
Sbjct: 772 GAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 555 GXXXXPPPPPXXXXXTPPPP 496
           G    PPPPP      PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 539 PPPPXXXXXXPPPPP 495
           PPPP      PPPPP
Sbjct: 765 PPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 677 GXXXXGXXPPPPPPP 721
           G    G  PPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 697 GXPPPPPPP 723
           G PPPPPPP
Sbjct: 759 GGPPPPPPP 767



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 697 GXPPPPPPP 723
           G PPPPPPP
Sbjct: 760 GPPPPPPPP 768


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 677 GXXXXGXXPPPPPPP 721
           G    G  PPPPPPP
Sbjct: 298 GDSANGGLPPPPPPP 312



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 697 GXPPPPPPP 723
           G PPPPPPP
Sbjct: 304 GLPPPPPPP 312


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 697 GXPPPPPPP 723
           G PPPPPPP
Sbjct: 7   GNPPPPPPP 15


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,651
Number of Sequences: 5004
Number of extensions: 21303
Number of successful extensions: 238
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)