Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_L04
         (991 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979     29   7.6  
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    29   7.6  
03_01_0515 - 3864796-3865425                                           29   7.6  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   7.6  
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329...    29   7.6  

>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
          Length = 304

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 540 PPPPPXXXXXTPPPPXK 490
           PPPPP      PPPP K
Sbjct: 57  PPPPPPQPAKEPPPPTK 73


>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 539 PPPPXXXXXXPPPPPXK 489
           PPPP      PPPPP K
Sbjct: 350 PPPPPPPPPPPPPPPPK 366


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 555 GXXXXPPPPPXXXXXTPPPP 496
           G    PPPPP     +PPPP
Sbjct: 67  GPLMPPPPPPPSVTSSPPPP 86


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 540 PPPPPXXXXXTPPPPXK 490
           PPPPP      PPPP K
Sbjct: 326 PPPPPPPKAAPPPPPPK 342



 Score = 28.7 bits (61), Expect = 7.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 539 PPPPXXXXXXPPPPPXK 489
           PPPP      PPPPP K
Sbjct: 344 PPPPPPAKGPPPPPPPK 360



 Score = 28.7 bits (61), Expect = 7.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 556 GXXXXXPPPPXXKXXNPPPPXKK 488
           G     PPPP  K   PPPP  K
Sbjct: 361 GPSPPPPPPPGGKKGGPPPPPPK 383


>02_01_0458 +
           3291563-3291733,3292082-3292769,3292847-3293363,
           3293438-3293637,3294137-3294372,3294469-3295302
          Length = 881

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 539 PPPPXXXXXXPPPPPXK 489
           PPPP      PPPPP K
Sbjct: 365 PPPPPPPRPPPPPPPIK 381



 Score = 28.7 bits (61), Expect = 7.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 538 PPPPXXKXXNPPPPXKK 488
           PPPP  +   PPPP KK
Sbjct: 366 PPPPPPRPPPPPPPIKK 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,429,508
Number of Sequences: 37544
Number of extensions: 539561
Number of successful extensions: 24212
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16823
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2893540780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)