Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_L04
         (991 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    31   1.7  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    26   3.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    26   3.5  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    26   3.5  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    29   6.8  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    29   6.8  
AF016446-1|AAC24166.1|   66|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
           protein Y47D7A.13 protein.
          Length = 311

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +2

Query: 821 FFFFXXXXXGGGXXXPPPPPXXXGXXXGG 907
           F F      GGG   PPPPP   G   GG
Sbjct: 16  FLFNLLGGGGGGCCAPPPPPPCGGGCGGG 44


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 25.8 bits (54), Expect(2) = 3.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 697 GXPPPPPPP 723
           G PPPPPPP
Sbjct: 316 GSPPPPPPP 324



 Score = 22.2 bits (45), Expect(2) = 3.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 691 GXGXPPPPP 717
           G G PPPPP
Sbjct: 272 GSGSPPPPP 280


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 25.8 bits (54), Expect(2) = 3.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 697 GXPPPPPPP 723
           G PPPPPPP
Sbjct: 301 GSPPPPPPP 309



 Score = 22.2 bits (45), Expect(2) = 3.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 691 GXGXPPPPP 717
           G G PPPPP
Sbjct: 257 GSGSPPPPP 265


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 25.8 bits (54), Expect(2) = 3.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 697 GXPPPPPPP 723
           G PPPPPPP
Sbjct: 295 GSPPPPPPP 303



 Score = 22.2 bits (45), Expect(2) = 3.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 691 GXGXPPPPP 717
           G G PPPPP
Sbjct: 251 GSGSPPPPP 259


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 848 GGGXXXPPPPPXXXGXXXGG 907
           GGG   PPPPP   G   GG
Sbjct: 49  GGGCAPPPPPPACGGGCGGG 68



 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 848 GGGXXXPPPPPXXXGXXXGG 907
           GGG   PPPPP   G   GG
Sbjct: 106 GGGCAPPPPPPACGGGCGGG 125


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 676 GXXXXGXGXPPPPPPP 723
           G    G G PPPPPPP
Sbjct: 640 GLPAVGAGAPPPPPPP 655


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 676 GXXXXGXGXPPPPPPP 723
           G    G G PPPPPPP
Sbjct: 466 GLPAVGAGAPPPPPPP 481


>AF016446-1|AAC24166.1|   66|Caenorhabditis elegans Hypothetical
           protein C02E7.7 protein.
          Length = 66

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 824 FFFXXXXXGGGXXXPPPPPXXXGXXXGG 907
           F F     GG    PPPPP   G   GG
Sbjct: 17  FLFPSGGGGGCGCAPPPPPPACGCGGGG 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,289,806
Number of Sequences: 27780
Number of extensions: 257500
Number of successful extensions: 6103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3593
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2584172786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)