Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_L02
(710 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collag... 30 7.1
D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain... 30 7.1
AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1... 30 7.1
AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1... 30 7.1
AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1... 30 7.1
AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V coll... 30 7.1
Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV ... 30 9.4
X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 ... 30 9.4
AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein. 30 9.4
>M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collagen
protein.
Length = 1838
Score = 30.3 bits (65), Expect = 7.1
Identities = 27/88 (30%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Frame = +2
Query: 440 GPXGXXXXXXXRGGTPFXXPPXKRGGXNPXGAPFKNXGXFPPGTTSFX*GL---GX*GKW 610
GP G RG T P GG P G P + P G T F G GK
Sbjct: 913 GPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKD 972
Query: 611 XXPLGWXVYGIRGFDDRVDVPXIPGEGG 694
P G GF + P PG G
Sbjct: 973 GLPGHPGQRGETGFQGKTGPPGPPGVVG 1000
>D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain
precursor protein.
Length = 1838
Score = 30.3 bits (65), Expect = 7.1
Identities = 27/88 (30%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Frame = +2
Query: 440 GPXGXXXXXXXRGGTPFXXPPXKRGGXNPXGAPFKNXGXFPPGTTSFX*GL---GX*GKW 610
GP G RG T P GG P G P + P G T F G GK
Sbjct: 913 GPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKD 972
Query: 611 XXPLGWXVYGIRGFDDRVDVPXIPGEGG 694
P G GF + P PG G
Sbjct: 973 GLPGHPGQRGETGFQGKTGPPGPPGVVG 1000
>AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 30.3 bits (65), Expect = 7.1
Identities = 27/88 (30%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Frame = +2
Query: 440 GPXGXXXXXXXRGGTPFXXPPXKRGGXNPXGAPFKNXGXFPPGTTSFX*GL---GX*GKW 610
GP G RG T P GG P G P + P G T F G GK
Sbjct: 913 GPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKD 972
Query: 611 XXPLGWXVYGIRGFDDRVDVPXIPGEGG 694
P G GF + P PG G
Sbjct: 973 GLPGHPGQRGETGFQGKTGPPGPPGVVG 1000
>AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 30.3 bits (65), Expect = 7.1
Identities = 27/88 (30%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Frame = +2
Query: 440 GPXGXXXXXXXRGGTPFXXPPXKRGGXNPXGAPFKNXGXFPPGTTSFX*GL---GX*GKW 610
GP G RG T P GG P G P + P G T F G GK
Sbjct: 913 GPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKD 972
Query: 611 XXPLGWXVYGIRGFDDRVDVPXIPGEGG 694
P G GF + P PG G
Sbjct: 973 GLPGHPGQRGETGFQGKTGPPGPPGVVG 1000
>AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 30.3 bits (65), Expect = 7.1
Identities = 27/88 (30%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Frame = +2
Query: 440 GPXGXXXXXXXRGGTPFXXPPXKRGGXNPXGAPFKNXGXFPPGTTSFX*GL---GX*GKW 610
GP G RG T P GG P G P + P G T F G GK
Sbjct: 913 GPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKD 972
Query: 611 XXPLGWXVYGIRGFDDRVDVPXIPGEGG 694
P G GF + P PG G
Sbjct: 973 GLPGHPGQRGETGFQGKTGPPGPPGVVG 1000
>AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V collagen
variant protein.
Length = 1792
Score = 30.3 bits (65), Expect = 7.1
Identities = 27/88 (30%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Frame = +2
Query: 440 GPXGXXXXXXXRGGTPFXXPPXKRGGXNPXGAPFKNXGXFPPGTTSFX*GL---GX*GKW 610
GP G RG T P GG P G P + P G T F G GK
Sbjct: 867 GPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKD 926
Query: 611 XXPLGWXVYGIRGFDDRVDVPXIPGEGG 694
P G GF + P PG G
Sbjct: 927 GLPGHPGQRGETGFQGKTGPPGPPGVVG 954
>Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV
protein.
Length = 1690
Score = 29.9 bits (64), Expect = 9.4
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 440 GPXGXXXXXXXRG--GTPFXXPPXKRGGXNPXGAPFKNXGXFPPGTT 574
GP G RG G+P PP RG P G P + P G T
Sbjct: 1201 GPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGAT 1247
>X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 chain
protein.
Length = 1690
Score = 29.9 bits (64), Expect = 9.4
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 440 GPXGXXXXXXXRG--GTPFXXPPXKRGGXNPXGAPFKNXGXFPPGTT 574
GP G RG G+P PP RG P G P + P G T
Sbjct: 1201 GPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGAT 1247
>AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein.
Length = 1324
Score = 29.9 bits (64), Expect = 9.4
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 440 GPXGXXXXXXXRG--GTPFXXPPXKRGGXNPXGAPFKNXGXFPPGTT 574
GP G RG G+P PP RG P G P + P G T
Sbjct: 1201 GPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGAT 1247
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,957,848
Number of Sequences: 237096
Number of extensions: 1791270
Number of successful extensions: 2394
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2342
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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