Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_L02
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical pr...    29   4.3  
X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.     29   4.3  
X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.     29   4.3  
AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen prot...    29   4.3  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical
           protein F57B1.4 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 440 GPXGXXXXXXXRGGTPFXXPPXKRGGXNPXGAPFKNXGXFPPG 568
           GP G        GG     PP   G   P G P  N     PG
Sbjct: 189 GPSGAPGAPGQSGGASLPGPPGPAGPPGPSGQPGSNGNAGAPG 231


>Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical
           protein F57B1.3 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 440 GPXGXXXXXXXRGGTPFXXPPXKRGGXNPXGAPFKNXGXFPPG 568
           GP G        GG     PP   G   P G P  N     PG
Sbjct: 185 GPSGAPGVPGQTGGASLPGPPGPAGPPGPSGQPGSNGNAGAPG 227


>Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.2 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 440 GPXGXXXXXXXRGGTPFXXPPXKRGGXNPXGAPFKNXGXFPPG 568
           GP G        GG     PP   G   P G P  N     PG
Sbjct: 188 GPSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPG 230


>Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.1 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 440 GPXGXXXXXXXRGGTPFXXPPXKRGGXNPXGAPFKNXGXFPPG 568
           GP G        GG     PP   G   P G P  N     PG
Sbjct: 188 GPSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPG 230


>X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 440 GPXGXXXXXXXRGGTPFXXPPXKRGGXNPXGAPFKNXGXFPPG 568
           GP G        GG     PP   G   P G P  N     PG
Sbjct: 188 GPSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPG 230


>X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 440 GPXGXXXXXXXRGGTPFXXPPXKRGGXNPXGAPFKNXGXFPPG 568
           GP G        GG     PP   G   P G P  N     PG
Sbjct: 188 GPSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPG 230


>AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen protein
           101 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 440 GPXGXXXXXXXRGGTPFXXPPXKRGGXNPXGAPFKNXGXFPPG 568
           GP G        GG     PP   G   P G P  N     PG
Sbjct: 186 GPSGAPGQPGRSGGASLPGPPGPAGPPGPSGQPGSNGNAGAPG 228


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = -3

Query: 594 PKPX*KEVVPGGKXPXFLKGAPXGFXPPLFXGGXKKGVPPL-FXXGGGXPXG 442
           P P      PG   P   +G P GF PP   G    G PP  F   G  P G
Sbjct: 411 PPPPGGPGAPGSYGPP--QGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPPG 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,109,642
Number of Sequences: 27780
Number of extensions: 227627
Number of successful extensions: 358
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)