Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_K24
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   5.7  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    25   9.9  

>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 672 LDYYRKQXLITLLPWKLPIVSKAEIRTEGQ 583
           +D YRK  L  L  W+  IV   +  TEG+
Sbjct: 114 MDMYRKNVLAPLQIWQTKIVQTLDEATEGK 143


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 727 GQSLLHVQRVPERSGRGXARLLQETGPYHSVAL 629
           GQ +L V  VP++ G G  RLL      H V +
Sbjct: 299 GQGILKVN-VPKQRGSGSGRLLMRNDAVHRVIM 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,350
Number of Sequences: 5004
Number of extensions: 49382
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)