Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_K21
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.47
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.4
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 7.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 7.7
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 7.7
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.47
Identities = 21/99 (21%), Positives = 27/99 (27%)
Frame = -3
Query: 820 PXRAXPPPPXXXTXTPARXPXRPTTXAAPXXXASXXTPNXPXXTPXPPPXXXXXPRXXXX 641
P PP P T P P T P +S P+ P P P P
Sbjct: 1027 PSADAPPIPVPSTAPPVPIP----TSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGA 1082
Query: 640 XXAPPXXPXXXTPTXXXXXXPAPXXXASLPXXRTTTXSP 524
P P P P ++P + +P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP 1121
Score = 27.5 bits (58), Expect = 2.5
Identities = 24/100 (24%), Positives = 29/100 (29%), Gaps = 1/100 (1%)
Frame = -3
Query: 820 PXRAXPPPPXXXTXTPARXPXRPTTXAAPXXXASXXTPNXPXXTPXPPPXXXXXPRXXXX 641
P A PP P + P P + P P PP P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223
Query: 640 XXAPPXXPXXXTPTXXXXXXPAPXXXA-SLPXXRTTTXSP 524
PP PT PAP A S+ R++ SP
Sbjct: 1224 AGLPP----VPVPTAKAPPVPAPSSEAPSVSTPRSSVPSP 1259
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.4
Identities = 22/66 (33%), Positives = 23/66 (34%)
Frame = -1
Query: 711 PPXXPXXXPXRHPXXXXXXEXXPXXKPRHXPXXXXLPXXXXPXAPPHXXRPASPXXXXPP 532
PP P P P P P LP P APP PA+P PP
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM-PAAPP--LPPAAPA---PP 477
Query: 531 PAPPXA 514
PAP A
Sbjct: 478 PAPAPA 483
Score = 27.9 bits (59), Expect = 1.9
Identities = 20/75 (26%), Positives = 23/75 (30%)
Frame = -2
Query: 842 TPTPPHXTXQSXPPPXRPXXXXTXTXAATPHHPXRTXXPXKXXNPQXXPXNXPXATXXXX 663
T TPP T S PP P + + P P P P A
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAA--PPL 469
Query: 662 XPXXPXPXXSPATXP 618
P P P +PA P
Sbjct: 470 PPAAPAPPPAPAPAP 484
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/91 (23%), Positives = 25/91 (27%), Gaps = 4/91 (4%)
Frame = -3
Query: 820 PXRAXPPPPXXXTXTPARXPXRPTTXA----APXXXASXXTPNXPXXTPXPPPXXXXXPR 653
P R+ P P + P PT + AP P+ P P PP P
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI 455
Query: 652 XXXXXXAPPXXPXXXTPTXXXXXXPAPXXXA 560
P P PAP A
Sbjct: 456 APPLPAGMPAAPPLPPAAPAPPPAPAPAPAA 486
Score = 26.6 bits (56), Expect = 4.4
Identities = 22/67 (32%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Frame = -1
Query: 711 PPXXPXXXPXRHPXXXXXXEXXPXXKPRHXPXXXXLPXXXXPXAPP-HXXRPASPXXXXP 535
PP P P P P P P LP P APP PA+P
Sbjct: 420 PPSLPPSAPPSLPPSA------PPSLPMGAPAAPPLPPSA-PIAPPLPAGMPAAPPLPPA 472
Query: 534 PPAPPXA 514
PAPP A
Sbjct: 473 APAPPPA 479
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/71 (26%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Frame = -3
Query: 763 PXRPTTXAAPXXXASXXTPNXPXXTPXPPPXXXXXPRXXXXXXA-PPXXPXXXTPTXXXX 587
P P + P S P TP PPP P A PP P P
Sbjct: 1683 PAHPVS-TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Query: 586 XXPAPXXXASL 554
P P ++L
Sbjct: 1742 SVPNPGDRSAL 1752
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/96 (21%), Positives = 28/96 (29%)
Frame = -3
Query: 820 PXRAXPPPPXXXTXTPARXPXRPTTXAAPXXXASXXTPNXPXXTPXPPPXXXXXPRXXXX 641
P PP P P P RP+ P AS P P P P +
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPS--IPPPSPAS--APPIPSKAPPIPSSLPPPAQPAAP 180
Query: 640 XXAPPXXPXXXTPTXXXXXXPAPXXXASLPXXRTTT 533
+PP P + P + P T++
Sbjct: 181 VKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSS 216
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = -1
Query: 645 PXXKPRHXPXXXXLPXXXXPXAPPHXXRPASPXXXXPPPAPP 520
P P P P P PP A PPP PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 319 LRSLISNLSNTCDLTPLPEWSCEQSAW 239
+RS+ L D+TP+ +W ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -1
Query: 588 PXAPP-HXXRPASPXXXXPPPAPPXAXXXXTXXNTGPXXAR 469
P PP + + A P PPP PP T + P +R
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSR 261
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = -3
Query: 826 TXPXRAXPPPPXXXTXTPARXPXRPTTXAAPXXXASXXTPNXPXXTPXPPP 674
T + PPPP P R P+ AP A+ TP P PP
Sbjct: 737 TPAVKHHPPPP------PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPP 781
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -3
Query: 820 PXRAXPPPPXXXTXTPARXPXRPTTXAAPXXXASXXTPNXPXXTPXPPP 674
P RA P + T + P RP T + AS PN P PPP
Sbjct: 130 PARAIEQQPTILSSTDSNIP-RPGTVKSS---ASPFVPNQNPSAPPPPP 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,655
Number of Sequences: 5004
Number of extensions: 18368
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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