Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_K18
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679...    30   1.6  
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    30   1.6  
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060...    29   3.7  

>10_08_0154 +
           15266430-15266953,15267748-15267820,15267893-15267949,
           15268248-15268303,15269584-15269797,15270497-15270538,
           15270661-15270735,15270820-15270903,15271880-15271944,
           15272436-15272655,15272820-15272908,15273326-15273440,
           15273519-15273554
          Length = 549

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 61  RSQHDAALPSTTPRQERKSSTDYSEPRHRTELYXDLXSRDARVXKKTDSIDLRDPNXLRR 240
           R +  ++ P     +E +   +  + R R++   D   RD R  K   +    DP   +R
Sbjct: 134 RERRSSSRPERRRTEEEEMVRELQKERERSDRNRDYRDRDVRRRKDDGAEPEADPERDQR 193

Query: 241 XVFAF 255
            VFAF
Sbjct: 194 TVFAF 198


>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +1

Query: 85  PSTTPRQERKSSTDYSEPRHRTELYXDLXSRDARVXKKTDSID 213
           PS TP  ER  S+D   PR     Y    +RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>08_02_0104 +
           12404890-12405129,12405244-12405333,12405953-12406036,
           12406888-12407132,12409032-12409095,12409270-12409968,
           12410063-12410176,12410287-12410418,12410594-12410770,
           12411085-12411138,12411230-12411292,12411396-12412307,
           12412408-12412535,12413680-12413962
          Length = 1094

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = +1

Query: 22  SSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYXDLXSRDARVXKKT 201
           S  +SPG  L   R  HD +L         KSST  +  R   E      SR     +KT
Sbjct: 731 SEADSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKT 787

Query: 202 DSID 213
           +S++
Sbjct: 788 ESVE 791


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,145,508
Number of Sequences: 37544
Number of extensions: 199427
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)