Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_K16
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
 Frame = -3

Query: 460 PPPXKKKXXPPPFXGGAPPXXXGGXPPPXKG--------XPQKRXXPPP 338
           PPP ++    PP   G+        PPP +          PQ R  PPP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/43 (30%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
 Frame = -3

Query: 460  PPPXKKKXXPPPFXGGAPPXXXGGXPPPXKGXPQKRXXP--PP 338
            PP   +   PP      PP      PPP    P     P  PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = -3

Query: 466 GXPPPXKKKXXPPPFXGGAPPXXXGGXPPPXKGXPQKRXXPPP 338
           G PPP      PPP  G  PP      PPP  G  +KR    P
Sbjct: 7   GNPPP------PPPPPGFEPPSQP--PPPPPPGYVKKRKNKTP 41


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = -3

Query: 469 GGXPPPXKKKXXPPPFXGGAPPXXXGGXPPPXKGXPQKRXXPPP 338
           GG PPP      PPP   GA P      PP       +   P P
Sbjct: 759 GGPPPPP-----PPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/55 (30%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
 Frame = -3

Query: 460 PPPXKKKXXPPPFXGGAPPXXX--GGXPPPXKGXPQKRXXPPPXXXXXKKXXGGG 302
           PPP      P P     PP     GG PPP          PPP          GG
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,840
Number of Sequences: 5004
Number of extensions: 26067
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)