Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_K11
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   144   1e-35
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   141   1e-34
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    45   1e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    30   0.35 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.7  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.5  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  144 bits (349), Expect = 1e-35
 Identities = 67/103 (65%), Positives = 80/103 (77%)
 Frame = -3

Query: 629 FREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 450
           +REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177

Query: 449 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 321
           +LLAREVLR+RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220



 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 37/63 (58%), Positives = 41/63 (65%)
 Frame = -2

Query: 828 NLLRXXEKXVXAXRXFVPIETPXDVFVIXSRPFGQRAVXKFAAHTGXTXIAERFTPGAFT 649
           NL +  EK V A R    IE P DV V+ +R +G RAV KFAAHTG T IA RFTPG FT
Sbjct: 52  NLGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFT 111

Query: 648 NQI 640
           N I
Sbjct: 112 NYI 114


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  141 bits (342), Expect = 1e-34
 Identities = 66/101 (65%), Positives = 79/101 (78%)
 Frame = -3

Query: 629 FREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 450
           +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178

Query: 449 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
           +LLAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 40/63 (63%), Positives = 42/63 (66%)
 Frame = -2

Query: 828 NLLRXXEKXVXAXRXFVPIETPXDVFVIXSRPFGQRAVXKFAAHTGXTXIAERFTPGAFT 649
           NL +  EK V A R    IE P DV VI SRP+G RAV KFAAHTG T IA RFTPG FT
Sbjct: 53  NLGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFT 112

Query: 648 NQI 640
           N I
Sbjct: 113 NYI 115


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 39/74 (52%)
 Frame = -3

Query: 656 LLLTRSKAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 477
           L+ T  K ++  P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227

Query: 476 SSHSIGLMWWLLAR 435
           S     L+  LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = -3

Query: 656 LLLTRSKAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIALCNTDSPLRFVDIAI 492
           L+LT + A F+  +P + ++     D   +   T A    +  + LC+ +S  RF D+A+
Sbjct: 42  LVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK-RFADLAV 100

Query: 491 PCNTKSSHSI 462
             NTK +H I
Sbjct: 101 AANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,723
Number of Sequences: 5004
Number of extensions: 58751
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)