Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_K06
         (1116 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.4 bits (48), Expect(2) = 1.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 736 PPPPXPPP 713
           PPPP PPP
Sbjct: 9   PPPPPPPP 16



 Score = 23.0 bits (47), Expect(2) = 1.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 733 PPPXPPPXKXKK 698
           PPP PPP   KK
Sbjct: 24  PPPPPPPGYVKK 35


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 621 PPPXXGGXXPPPPP 662
           PPP   G  PPPPP
Sbjct: 766 PPPGVAGAGPPPPP 779



 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 621 PPPXXGGXXPPPPP 662
           P P  GG  PPPPP
Sbjct: 754 PAPIMGGPPPPPPP 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,976
Number of Sequences: 5004
Number of extensions: 29127
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 591678054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)