Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_K05
(823 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 28 1.4
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 28 1.4
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 27 4.3
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 26 5.6
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 26 5.6
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 7.4
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 7.4
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 9.8
SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.8
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 200 PELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDRSDP 78
PE+ ++ R+++ A +VP W+ V+PI K G + P
Sbjct: 58 PEIAQSVERIFK----AAKVPIEWERVKVYPILKNGTTTIP 94
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 249 LMDVQESEFPPD-CTLCKADLRQGTITP 329
L D+QESEF PD T+ R GTI+P
Sbjct: 54 LSDLQESEFKPDGTTMVYVFPRPGTISP 81
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 194 LTPALTRLYRLSYCANRVPSSWKTA-HVHPIPKKGDRSDPSSYRPIAIT 51
L +LTR+ L + + + K +V PKKG DPS+ P +T
Sbjct: 14 LRVSLTRVAHLVFANSHESNDLKMVENVSSTPKKGVLEDPSTLTPEVVT 62
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = +3
Query: 225 GDAVWPTRLMDVQESEFPPDCTLCKADLRQGTITPGDVRWCGTPVVHGRVRGEEFDQKVS 404
G + ++ D ES + L+ G I + WC TP++ G +D K S
Sbjct: 210 GKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQS---GGSYDLKPS 266
Query: 405 LL 410
+
Sbjct: 267 AI 268
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 388 NSSPRTRPWTTGVPHHRTSPGVIVPCRRSALHSVQSGGNSDS 263
N SP T P PH+ +SP + P +R + S+ +G ++ S
Sbjct: 231 NESPST-PTAPDFPHYNSSPSELSPTQRRS--SISNGKDAPS 269
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -3
Query: 218 VLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDRSDPSSYRPI 60
VLK + +++PA T YR + +++VP K + K+G S S Y +
Sbjct: 256 VLKKPSRKMSPAYTSSYRQNSPSSQVPPVSKKHVIIYENKEGSSSSESVYEDV 308
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 7.4
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Frame = -3
Query: 710 SRDXAHLXRSAYGAWDNARRRQDPNISEERRKYNAASRSYKKVIAKAKSEHVARVGERLK 531
S+D SAY + + Q+ +E+ +Y+ +SY++ KAK + + E L
Sbjct: 166 SKDETDDIESAYLNLRSHLQVQEQVYAEKDHEYSLQLQSYREAAEKAKQD-ILETKENLS 224
Query: 530 SYPSGSRAFWSLAKAAEG-NFCRSSLPPLRKSDDSLAHSAKEKADLLV 390
S S S L +A E +S LR+ LA ++K LV
Sbjct: 225 SELSISNI--QLKEAKERLEAANASYQKLRREHKELALYHEKKTHSLV 270
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 9.8
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Frame = -3
Query: 536 LKSYPSGSRAFWSLAKAAEGNFCRSSLPPLRKSDDSLAHSAKEKA--DLLVKLFASNSTV 363
LK+Y R + + + S PP +K +++ +AK A DL + N+
Sbjct: 432 LKTYDRAERLRQKIQEVSSNKRLIPSTPPTKKPINAVLDAAKNSAAKDLHLAKMKLNNKN 491
Query: 362 DDGGATPPNIPRCDSSLPEI----CFTQCAVRR 276
D+ +P + P+I FT+ + R+
Sbjct: 492 DESSLSPAKSHAVITQAPKIPLISTFTRLSTRK 524
>SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 113
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = -3
Query: 797 FXXXGSRXGXXIPSXXXPWGSXQTLYNNASRDXAHLXRSAYGAWDNARRRQDPNISEE-- 624
F R +PS + + RD A + +WD R+ + +E
Sbjct: 15 FPFSNCRYASTVPSPRSGISNTNDFFKRIGRDTAEKVNGKFESWDGLFRKSTKTMKKEGI 74
Query: 623 ---RRKYNAASRS 594
RKY A+ R+
Sbjct: 75 DVRTRKYIASQRN 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,881
Number of Sequences: 5004
Number of extensions: 65343
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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