Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_K05
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 37 0.017
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 33 0.36
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 32 0.63
05_01_0274 - 2119122-2119775,2121457-2121570,2121895-2122203,212... 30 2.6
03_02_0971 - 12807981-12808094,12808949-12809053,12809236-128092... 30 2.6
12_02_0783 + 23125786-23126037,23126867-23127784 29 4.5
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985... 29 5.9
05_03_0480 - 14534133-14534759,14535184-14535405 29 5.9
02_05_0209 - 26786399-26786449,26786533-26786625,26786721-267868... 29 5.9
11_01_0610 + 4889158-4889386,4889584-4890297,4890814-4891166,489... 28 7.8
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 37.1 bits (82), Expect = 0.017
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = -3
Query: 251 KSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDRSDPSS 72
KS GPDG PA + L + R + + +P + IPKK D
Sbjct: 907 KSPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKD 966
Query: 71 YRPIAITSLLSKVMER 24
YRPI++ +++ KV+ +
Sbjct: 967 YRPISLCNVVYKVVSK 982
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/83 (20%), Positives = 36/83 (43%)
Frame = -3
Query: 272 LRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKG 93
+ ++ K+ GPDG +K C + RL + N ++ + +PKK
Sbjct: 321 MSIIPADKAPGPDGFNGFFMKKCWHIIAQDYYRLVAHFHAGNVDLEILNSSFITLVPKKT 380
Query: 92 DRSDPSSYRPIAITSLLSKVMER 24
+ +RPI++ + K++ +
Sbjct: 381 SLETVNDFRPISLMGISLKIVTK 403
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 31.9 bits (69), Expect = 0.63
Identities = 18/80 (22%), Positives = 34/80 (42%)
Frame = -3
Query: 272 LRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKG 93
++++ K+ PDGI LK C P ++ L + + + +PKK
Sbjct: 231 IKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTDLQPINKSFITLVPKKS 290
Query: 92 DRSDPSSYRPIAITSLLSKV 33
+ YRPI++ + K+
Sbjct: 291 SPETVNDYRPISLMGISLKL 310
>05_01_0274 -
2119122-2119775,2121457-2121570,2121895-2122203,
2123743-2123904,2124046-2124129,2124315-2124500
Length = 502
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 352 PPSSTVEFEAKSLTRRSAFSFALWARLSSDFRSGG 456
PPSS VE ++TR F+ A+ A LSS GG
Sbjct: 423 PPSSVVETMTAAITRDPNFTTAVAAALSSIMAGGG 457
>03_02_0971 -
12807981-12808094,12808949-12809053,12809236-12809295,
12809399-12809537,12809648-12809832,12809926-12810009,
12810093-12810215,12810617-12810796,12811017-12811092,
12811178-12811277,12811355-12811430,12812155-12812244,
12812342-12812449,12813583-12813651,12813751-12813921,
12814002-12814072,12814263-12814360,12814659-12814719,
12814935-12814971,12815217-12815308,12815428-12815549,
12816281-12816414
Length = 764
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 247 DLWTXXXXXXXLTAHCVKQISGRELSHRGMFGGVAPPSSTVEFEAKS 387
DL T LT C+ +I G LSH+ + PSS V F S
Sbjct: 362 DLETVCVKDRLLTNECIDKIVGFALSHQLKHSTIPDPSSDVRFTLSS 408
>12_02_0783 + 23125786-23126037,23126867-23127784
Length = 389
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -1
Query: 160 LIALTG--FRLHGRPP-TSTLSPRRVTGRTHR 74
L+A TG +RL G PP T T PRR TG R
Sbjct: 158 LLAATGQSWRLRGSPPPTPTPPPRRATGERRR 189
>06_01_1159 -
9852316-9852441,9852743-9852838,9852912-9852977,
9853091-9853180,9853262-9853373,9853515-9853598,
9853864-9853940,9854823-9854873,9854924-9855031,
9855703-9855774,9856952-9857011,9857808-9857876,
9858005-9858088,9858212-9858295,9859106-9859198,
9859930-9860030,9861155-9861264,9863058-9863104,
9863693-9863778,9863940-9864012,9864454-9864540,
9864650-9865301,9866164-9867182,9867702-9867797
Length = 1180
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 476 NFCRSSLPPLRKSDDSLAHSAKEKADLLVKLFASNSTVDDGGAT 345
N C P +RK D S+AHS +++ A+ T+ D +T
Sbjct: 123 NKCLFGNPNMRKEDGSVAHSMFHRSEKRKSTLAACGTITDEAST 166
>05_03_0480 - 14534133-14534759,14535184-14535405
Length = 282
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -1
Query: 403 LTFWSNSSPRTRPWTTGVPHHRTSPGVIVPCRRSALHSVQSGGNSDSWTSISRVGQTAS- 227
L+F + ++ TR T V G+ +S HSV GG+ S R G+ A
Sbjct: 18 LSFINKATKETRSETVRVDIKTAGCGLRGQRCKSGCHSVDQGGDDGSAQCGGRSGRIAKM 77
Query: 226 PQW 218
PQW
Sbjct: 78 PQW 80
>02_05_0209 -
26786399-26786449,26786533-26786625,26786721-26786861,
26786973-26787050,26787146-26787247,26787595-26787693,
26787804-26787875,26787964-26788104,26788222-26788503
Length = 352
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -3
Query: 680 AYGAWDNARRRQDPNISEERRKYNAASRSYKKVIAKAKSEHVA 552
A+G DN+ +DP S K +A S+K+++A A+ + +A
Sbjct: 76 AFGE-DNSSEEEDPAYSAWMAKCPSALASFKQIVASAQGKKIA 117
>11_01_0610 +
4889158-4889386,4889584-4890297,4890814-4891166,
4891619-4891830,4892633-4892889,4892984-4893162,
4893901-4893948
Length = 663
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 668 WDNARRRQDPNISE-ERRKYNAASRSYKKVIAKAKSEHVARVGERLKSYPSGSRAFWSLA 492
WD RR+D + SE E+ K + AS + V K + A V E+ + +G A A
Sbjct: 115 WDRDDRRRDEDYSEDEKEKISGASGNNAGVSDKVVTSDPA-VEEKGLTMDTGGAADKEAA 173
Query: 491 KAAEG 477
+ AEG
Sbjct: 174 EVAEG 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,777,732
Number of Sequences: 37544
Number of extensions: 566855
Number of successful extensions: 1636
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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