Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_K05
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   7.9  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 166  RYRRVSAGVSSGAHVFRTTAGMPS 237
            R+ R   G SSGA    + A MP+
Sbjct: 1033 RFLRAKPGKSSGAAAMASAAPMPA 1056


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 30  HHLGKQGSYRDRPIARW 80
           HH G  GS +D P  R+
Sbjct: 64  HHYGAAGSQQDMPYPRF 80


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -3

Query: 374 NSTVDDGGATPPN--IPRCDSSL 312
           NS+ D+GG T PN  + +C S +
Sbjct: 573 NSSNDEGGKTSPNSAVRKCMSPI 595


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 534 KELSLWEPCFLVARQS 487
           KE+ +W P F + R S
Sbjct: 392 KEMKIWIPAFAIHRDS 407


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 344 PPNIPRCDSSLPEICFTQC 288
           P N   CD SLP+  + QC
Sbjct: 25  PNNWRICDRSLPQKEYNQC 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,624
Number of Sequences: 438
Number of extensions: 4855
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)