Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_K04
         (763 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ314804-1|ABC40723.1|  478|Homo sapiens opsin 4 (melanopsin) pr...    31   3.4  
BC113558-1|AAI13559.1|  478|Homo sapiens opsin 4 (melanopsin) pr...    31   3.4  
AF147788-1|AAF24978.1|  478|Homo sapiens melanopsin protein.           31   3.4  
AB065730-1|BAC05951.1|  472|Homo sapiens seven transmembrane hel...    31   3.4  

>DQ314804-1|ABC40723.1|  478|Homo sapiens opsin 4 (melanopsin)
           protein.
          Length = 478

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 4   PSWYNEKLGYAXKLGPLEGISKSGPGTWS 90
           PSW++        LG L  IS + PGTW+
Sbjct: 26  PSWWDSSQSSISSLGRLPSISPTAPGTWA 54


>BC113558-1|AAI13559.1|  478|Homo sapiens opsin 4 (melanopsin)
           protein.
          Length = 478

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 4   PSWYNEKLGYAXKLGPLEGISKSGPGTWS 90
           PSW++        LG L  IS + PGTW+
Sbjct: 26  PSWWDSSQSSISSLGRLPSISPTAPGTWA 54


>AF147788-1|AAF24978.1|  478|Homo sapiens melanopsin protein.
          Length = 478

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 4   PSWYNEKLGYAXKLGPLEGISKSGPGTWS 90
           PSW++        LG L  IS + PGTW+
Sbjct: 26  PSWWDSSQSSISSLGRLPSISPTAPGTWA 54


>AB065730-1|BAC05951.1|  472|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 472

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 4   PSWYNEKLGYAXKLGPLEGISKSGPGTWS 90
           PSW++        LG L  IS + PGTW+
Sbjct: 26  PSWWDSSQSSISSLGRLPSISPTAPGTWA 54


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,139,010
Number of Sequences: 237096
Number of extensions: 966374
Number of successful extensions: 1833
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)