Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_J24
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.44 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    29   0.59 
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +3

Query: 195 PPDPQCPPETAVRP---STARSVSDRAGTSRMLPL*PGNRCPA--PTGTARRTER*TVP 356
           PP P+  P T  +P   S++R+VS+        P  PG   PA  P G A RT    VP
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPP---PAIPGRSAPALPPLGNASRTSTPPVP 418


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = -1

Query: 394 SPHIRAGRERAPPGTVHLSVRRAVPVGAGHLFPGYNGSMREV---PARSETDLAVEGRTA 224
           SP  R+GR R  P   HLS+   +P   G   P  +G  R     P      + V  RT 
Sbjct: 349 SPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERDPTIPPDSIKVYSRTL 408

Query: 223 VSGG 212
             GG
Sbjct: 409 FLGG 412


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 192 RPPDP-QCPPETAVRPSTARSVS 257
           RPP     PP   VRPST+RS S
Sbjct: 122 RPPKSYDFPPSQQVRPSTSRSPS 144


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 330  ALCLSALGICFPAIMEACVRFPHDLKPIWLL 238
            A CL   G      M+ C  FPH++ P+ L+
Sbjct: 2070 ACCLWYWGSYIDRSMQECHSFPHEVYPLGLI 2100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,229
Number of Sequences: 5004
Number of extensions: 43341
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)