Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_J24
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    29   0.038
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.4  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   5.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 29.5 bits (63), Expect = 0.038
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = +1

Query: 472 HVPAPHHVHRHEAVQS---VANEDGHREHHDDASRQRPGRKIES 594
           H   PHH H      S    A + GH  HH     + PG ++E+
Sbjct: 436 HAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPGPQVET 479


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +1

Query: 481 APHHVHRHEAVQSVANEDGHREHHDDASRQ 570
           +PHH H +  +        H  HH   S Q
Sbjct: 333 SPHHQHGNHTMGPTMGPPHHHHHHQTQSLQ 362



 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 174 AEPCTCRPP-DPQCPPETAVRPSTARSVSD 260
           A PCT  PP  P   P + ++ +T+ SVSD
Sbjct: 391 ATPCTPSPPRGPGGVPTSVIQAATS-SVSD 419


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 197 TRPTMPTRNSSTSLNSQIGFRSCGNLTHASIIAGKQMPSADRHS 328
           T   + TR     L  + G    GN+  ASI++  Q    D H+
Sbjct: 323 TGSVINTRGERIQLTEKNGIDVLGNIMEASILSPNQNVYGDLHN 366


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 214  GHCGSGGRHVHGSAGHLPLVPVDEPAP 134
            G  GS GR   GSA ++P+    EP P
Sbjct: 1835 GSRGSVGRRSVGSARNIPVSGSPEPPP 1861



 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 588  DLPSGPLATSVIVMFAVAIFISY 520
            D P  P+A   +VM + +I +S+
Sbjct: 1178 DAPEAPIAIKALVMSSESILVSW 1200


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 281 ASIIAGKQMPSADRHSAPNREMNSPRRGTLTASTN 385
           A+ +A   +  A +H++P+   +SP+    +AST+
Sbjct: 45  AAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTS 79


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -3

Query: 581 LPGRWRLASS*CSRWPSSLATDCTAS 504
           + G W   +  C  W S     CTAS
Sbjct: 103 ISGNWSFGTIMCDLWVSFDVLSCTAS 128


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 636 WRPPVTYKSTIS 671
           W+PP  YKS+ S
Sbjct: 143 WQPPAVYKSSCS 154


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 609 CSDSITLDLPSGPLATSVIVMFAVAIFISYGLHCF 505
           CS +   +L    +  +V+++ ++ I ISY L  F
Sbjct: 1   CSSTEANELVMSVIVGTVVIVSSLIILISYALILF 35


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -3

Query: 575 GRWRLASS*CSRWPSSLATDCTAS 504
           G W L    C  W S     CTAS
Sbjct: 102 GTWELGPMLCDSWVSLDILLCTAS 125


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +1

Query: 196 HQTHNAHQKQQYVPQQPDRFQ 258
           +  HN  Q  QY+P+     Q
Sbjct: 387 YSKHNTQQFTQYIPESSSNLQ 407


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 588  DLPSGPLATSVIVMFAVAIFISY 520
            D+P  P    V+V    A+FIS+
Sbjct: 1212 DVPGSPADIKVVVSSPQALFISW 1234


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 588  DLPSGPLATSVIVMFAVAIFISY 520
            D+P  P    V+V    A+FIS+
Sbjct: 1208 DVPGSPADIKVVVSSPQALFISW 1230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,813
Number of Sequences: 438
Number of extensions: 3658
Number of successful extensions: 36
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)