Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_J22
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.8  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 634 GWLVYGNRGFDDRVDVXEIXGEGGLXXKGXTA 729
           GW ++G++GF  ++   +I G G +   G ++
Sbjct: 164 GW-IWGDQGFLKKLGAVDIAGSGAVHLVGGSS 194


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -2

Query: 670 DHQIPDSHTPTTPDLTSISINPLTPY*KEFAPGLKPP*SSEAPSAYLTPSSLGMXKGVSP 491
           +H+    HT T   L+   I P TP    F   +    +   P +   P   GM  G+ P
Sbjct: 281 EHEAESEHTSTPNFLSEAKIFPPTP--GSFNFSMAALATEHTPLSVKFP---GMGHGLQP 335

Query: 490 P 488
           P
Sbjct: 336 P 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,061
Number of Sequences: 438
Number of extensions: 3855
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)