Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_J14
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.9  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   4.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 699 PPPPXXGGGGXXGXPPPP 646
           PPPP   G G    PPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 699 PPPPXXGGGGXXGXPPPP 646
           PPPP   G    G PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 699 PPPPXXGGGGXXGXPPPP 646
           PPPP  G  G    PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 696 PPPXXGGGGXXGXPPPPXFXXXXKKXXXPPP 604
           PPP    GG    PPPP           PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = -2

Query: 699 PPPPXXGGGGXXGXPPPPXFXXXXKKXXXPPP 604
           PPP   G G     PPPP       +   P P
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 653 GGXPXXPPPPXXGGGG 700
           GG P  PPPP   G G
Sbjct: 759 GGPPPPPPPPGVAGAG 774


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 675 GGXXGXPPPPXFXXXXKKXXXPPPXFFXXKKKK 577
           G     PPPP F    +    PPP +   +K K
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -2

Query: 672 GXXGXPPPPXFXXXXKKXXXPPPXFFXXKKKKXXP 568
           G    PPPP       +   PPP  +  K+K   P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/51 (31%), Positives = 18/51 (35%)
 Frame = -2

Query: 699 PPPPXXGGGGXXGXPPPPXFXXXXKKXXXPPPXFFXXKKKKXXPPPXXXXP 547
           PPPP     G    PPPP      +    PPP       +   PPP    P
Sbjct: 208 PPPPMHHKPGEH-MPPPPMHHEPGE--HMPPPPMHHEPGEHMPPPPMHHEP 255



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/51 (31%), Positives = 18/51 (35%)
 Frame = -2

Query: 699 PPPPXXGGGGXXGXPPPPXFXXXXKKXXXPPPXFFXXKKKKXXPPPXXXXP 547
           PPPP     G    PPPP      +    PPP       +   PPP    P
Sbjct: 247 PPPPMHHEPGEH-MPPPPMHHEPGE--HMPPPPMHHEPGEHMPPPPMHHEP 294



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/51 (31%), Positives = 18/51 (35%)
 Frame = -2

Query: 699 PPPPXXGGGGXXGXPPPPXFXXXXKKXXXPPPXFFXXKKKKXXPPPXXXXP 547
           PPPP     G    PPPP      +    PPP       +   PPP    P
Sbjct: 286 PPPPMHHEPGEH-MPPPPMHHEPGE--HMPPPPMHHEPGEHMPPPPMHHEP 333


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/45 (26%), Positives = 13/45 (28%)
 Frame = -3

Query: 698 PPPPXXGGGXXXGXPPPPXXXXXXKXXXXXPPXFFXXKKKXXXPP 564
           PPPP        G  PPP            PP     +     PP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,695
Number of Sequences: 5004
Number of extensions: 28828
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)