Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_J02
         (942 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   9.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   9.3  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 632 VPVSSMEVKTAWMASPGDLTVP 697
           VP+ + E+KT    + GD T+P
Sbjct: 414 VPLIAREIKTDLKLASGDYTIP 435


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 1   RTSCTMKXWVRVSLGPSRD 57
           R + +MK  VR+ +GP  D
Sbjct: 492 RNNTSMKGTVRIFIGPKED 510


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 530  SIVXPXNRPNGHSCFLCEIVIRPAAYAIIPKAGSVPVSSMEVKTAWMASPGDL 688
            SI    N+P  + C   +   RPA+ A   KA    + +M   +  + SPG+L
Sbjct: 868  SISHENNQPTMNKCSDRK---RPASQATSVKAEPGSIMAMSESSKKVLSPGEL 917


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,039
Number of Sequences: 438
Number of extensions: 5227
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)