Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_I17
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735     34   0.12 
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    34   0.16 
06_03_0804 + 24761974-24763196,24763674-24764019                       33   0.28 
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272...    33   0.37 
05_07_0157 - 28079181-28079720                                         30   2.0  
07_03_0476 - 18547223-18548187,18548743-18549958                       28   7.9  

>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
          Length = 738

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 584 QFAAFNDCLYRSMSSAGWLLVIDVDE-VVLPH 492
           QF   NDCL+R   +A W    DVDE + LP+
Sbjct: 334 QFLVVNDCLHRYRHAANWTFFFDVDEYIYLPN 365


>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 584 QFAAFNDCLYRSMSSAGWLLVIDVDEVV 501
           QF   NDCL+R   +A W    DVDE +
Sbjct: 337 QFLVVNDCLHRYRHAANWTFFFDVDEYI 364


>06_03_0804 + 24761974-24763196,24763674-24764019
          Length = 522

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 584 QFAAFNDCLYRSMSSAGWLLVIDVDEVV 501
           QF   NDCL+R   +A W    DVDE +
Sbjct: 335 QFLVVNDCLHRYRHAARWTFFFDVDEYI 362


>05_07_0331 -
           29324967-29326256,29326919-29327020,29327226-29327278,
           29327628-29327674,29327762-29327841,29327933-29328016,
           29328383-29328433,29328925-29329050,29329231-29329347,
           29329710-29329851,29329986-29330053,29330509-29330608,
           29330713-29330840,29330929-29330997,29331083-29331205
          Length = 859

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +1

Query: 34  IYVGQAMVKLFLSVFILCWSSSVHRCAVRSTVDGTVRQFMPPN 162
           IYV  A V+ F+ +++  +SS +H CAVR  V+  +R  +PP+
Sbjct: 294 IYVRHAKVQNFVLLYV--FSSWMHFCAVRVFVESILRYGLPPS 334


>05_07_0157 - 28079181-28079720
          Length = 179

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +3

Query: 111 RGAVHGGRDRQTVHAAEFACDPIVVEQGPVGGHADGASPWRELPQEVVPELDGVAR 278
           RG V   ++R  V AA FA   +V   G  GG  DGA   +     V+ E+   AR
Sbjct: 69  RGLVDHLQERLGVSAAAFAPAAVVAAPGAAGGGEDGAPAEKTEFDVVIEEVPSSAR 124


>07_03_0476 - 18547223-18548187,18548743-18549958
          Length = 726

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 171 RMRIRRHELSDGPVHRGPHRAPVDRRAPTEDKHREEKLN 55
           +MR R HEL  G +HR  H    ++     D    E LN
Sbjct: 385 KMRARAHELGAGELHRRKHGKAWEKLIEKHDVGENEWLN 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,963,144
Number of Sequences: 37544
Number of extensions: 412383
Number of successful extensions: 1420
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)