Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_I16
         (1124 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0197 + 2323790-2324098,2324145-2324774                           26   2.8  
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225           26   10.0 

>04_01_0197 + 2323790-2324098,2324145-2324774
          Length = 312

 Score = 25.8 bits (54), Expect(2) = 2.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 720 GNPPPPPP 697
           GNPPPPPP
Sbjct: 25  GNPPPPPP 32



 Score = 23.0 bits (47), Expect(2) = 2.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 717 NPPPPPPXXXXXXKFF 670
           N PPPPP      +FF
Sbjct: 72  NAPPPPPQHSKLAEFF 87


>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
          Length = 467

 Score = 25.8 bits (54), Expect(2) = 10.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 699 GGGGGGXXXXXXGXKXPPP 755
           GGGGGG        K PPP
Sbjct: 21  GGGGGGGGFSPTAAKPPPP 39



 Score = 21.0 bits (42), Expect(2) = 10.0
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 852 PPPPPP 869
           PPPPPP
Sbjct: 57  PPPPPP 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,175,542
Number of Sequences: 37544
Number of extensions: 544352
Number of successful extensions: 13961
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7950
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3398064036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)