Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_I13
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...   147   1e-36
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    44   3e-05
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    28   1.3  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    28   1.7  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    27   2.3  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    27   2.3  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    26   5.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   5.3  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    25   9.3  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   9.3  

>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score =  147 bits (357), Expect = 1e-36
 Identities = 70/167 (41%), Positives = 109/167 (65%)
 Frame = -2

Query: 519  YPQVASDFFRFRDKYGPVKHLDTKTFLVGPAVGDTIEVKIERGKTLDIRTVAVSEDMTAA 340
            +P V  ++ +F D+YG +  + TK FL  P + + + V+I++GKTL ++ VA+       
Sbjct: 1017 FPGVFEEYRQFVDRYGDLTTVPTKFFLSRPEMNEEMHVEIDQGKTLIVKFVALGPLNPRT 1076

Query: 339  GEREVFFELNGQLRSVFIRDENASKEMKIHPKAVKGDKNQVGAPMPGTVLTIKVKEGDKV 160
            G+REV+FELNG+ R V + D+ A+ E    P+A  G+   V APM GT++ I+VKEG KV
Sbjct: 1077 GQREVYFELNGENRHVTVEDKKAAIETVTRPRADPGNPGHVAAPMSGTIVEIRVKEGAKV 1136

Query: 159  EKGQPIAVLSAMKMEMIVQAPKAGTVKTVSITNGQKLEGDDLICTIE 19
            +KG  IAVLSAMKME+++ AP +G +K++++  G  + G DL   +E
Sbjct: 1137 KKGDIIAVLSAMKMEIVISAPHSGVLKSLAVVQGDSVNGGDLCAVLE 1183


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
 Frame = -2

Query: 315 LNGQLRSVFIRDENASKEMKIHPKAV----KGDKNQVGAPMPGTVLTIKVKEGDKVEKGQ 148
           LNG   +V+ RDE     + I   +     + D  Q+  P PG ++   V+ G+ ++ G+
Sbjct: 677 LNGHSYTVYYRDEVTGTRISIDNLSCMLEQENDPTQLRTPSPGKLVRFLVETGEHIKAGE 736

Query: 147 PIAVLSAMKMEMIVQAPKAGTVKTVSITNGQKLEGDDLI 31
             A +  MKM M + A + G V+ +    G  L+  D++
Sbjct: 737 AYAEVEVMKMIMPLVATEDGVVQLIK-QPGASLDAGDIL 774


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 374 LMSRVFPRSILTSMVSPTAGPTRKVLVSRCLTGPYLSRKRKKSL 505
           L + V      T  + P   PT+K  ++R  T P   R R KSL
Sbjct: 52  LETNVSSHQSATKFIEPEPSPTKKTKLTRRDTRPLAERARPKSL 95


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 477 YGPVKHLDTKTFLVGPAVG 421
           YGP KHLD K  + G  VG
Sbjct: 380 YGPAKHLDNKHTIFGRVVG 398


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/57 (24%), Positives = 22/57 (38%)
 Frame = +2

Query: 254 IFISLLAFSSLMKTDRSCPLSSKKTSRSPAAVMSSDTATVLMSRVFPRSILTSMVSP 424
           +FI+     S    D+  P+  K  +R P  VM   T  +    + P   +   V P
Sbjct: 506 VFINQKFLDSFAIVDKLLPVLEKVKTREPTVVMGMVTVYISAGAIIPEETVHEQVIP 562


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 219 VGAPMPGTVLTIKVKEGDKVEKGQPIAVL--SAMKMEMIVQAPKAGTVKT 76
           V AP  G +    VKEGD +   Q IAV+  SA   E     PK   VKT
Sbjct: 88  VTAPDAGVLKEQLVKEGDTITIDQDIAVIDTSAAPPEGGSAGPKKDEVKT 137


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -1

Query: 193 SHYQSEGRRQSREGAADSRALRYENGNDRSSPQGWYRQDRLDYKRTKTRRRRFDLHYRIK 14
           S+Y+ + R + +E   D R  +    N+R S   +Y  DR  +KR  T  +  D H R K
Sbjct: 359 SNYRDDYRHRRKE--RDHRDDQSSFRNERFS--NYYGDDRSYHKRRNTGNKNCDDHLRDK 414

Query: 13  KKKK 2
             ++
Sbjct: 415 SPER 418


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/51 (31%), Positives = 18/51 (35%)
 Frame = -2

Query: 222  QVGAPMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPKAGTVKTVS 70
            Q  AP+  T  TIK        K  P  V SA      +  P A     VS
Sbjct: 1039 QAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVS 1089


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 280 VSDED*PQLPVELEEDLALAGGRHVLRHRHRPDVQGLSA 396
           V+ E   + P+ LEED  + G  ++++ ++ PD+  L A
Sbjct: 18  VNKEQTYKKPIPLEEDDYIEGLSYIIQQQYFPDLPKLKA 56


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -2

Query: 318 ELNGQLRSVFIRDENASKEMKIHPKAVKGDKNQVGAPMPGTVL 190
           E  GQ +   + D N      +  + VK D NQ    +  T+L
Sbjct: 796 ESKGQSKKTLLHDSNMESLKSVISRIVKKDSNQSDDSVESTIL 838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,414
Number of Sequences: 5004
Number of extensions: 50552
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)