Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_I11
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    28   1.9  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   5.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.7  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   5.7  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   10.0 
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    25   10.0 

>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 363 LARSPAIGSRVMADRVPPTALGEGVTRRHQSGLSAR 256
           LA  P++     AD+  P+   E +TR++  G+S R
Sbjct: 209 LASRPSLPDLTSADKSQPSDEAESITRKNSIGMSTR 244


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/64 (21%), Positives = 27/64 (42%)
 Frame = +2

Query: 200 PTDAGPVATSDTTTGSLVQRAESPL*WRRVTPSPRAVGGTRSAITRLPIAGERASTPPHV 379
           P  A      +TTT  + +   +P+    +TP   A+      + R  ++  R +TP   
Sbjct: 194 PMAAMTTPMEETTTTPMEETTTTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTPMEA 253

Query: 380 WVSP 391
            ++P
Sbjct: 254 MITP 257


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
 Frame = +3

Query: 96  RSQPAPY-LGPGRSPVGAIETAGQG*HRAHYIHPTVPRTPDRWPPATRPPVPSFSGPRAR 272
           ++ P P  L P   P   +++          + P  P+ P   PP ++ PV + S   + 
Sbjct: 163 KAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP--PPLSQAPVANTSSRPSS 220

Query: 273 FDGAALHLPPERSGERGLPSPG 338
           F   A H P   S     P+ G
Sbjct: 221 FAPPAGHAPNVTSESPKFPNRG 242


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 192  PTVPRTPDRWPPATRPPVPSFSGPRARFDG 281
            P+VP +P + P A++  +P+F G    + G
Sbjct: 1578 PSVPTSPLKAPTASQLIIPNFDGSITNYSG 1607


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 667 PAWEVQXRVLVAKIEPXLSCLASWHR 590
           P+W++   VLV  I   L C+  W +
Sbjct: 909 PSWQLSGAVLVVDILATLFCIFGWFK 934


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 20/50 (40%), Positives = 22/50 (44%)
 Frame = +3

Query: 192 PTVPRTPDRWPPATRPPVPSFSGPRARFDGAALHLPPERSGERGLPSPGF 341
           P V R   R  P  + PV   +GP  R  G     PP   G RG P PGF
Sbjct: 98  PGVARPAGRGIPLGQAPV-GLAGP-VRGVGYTAPPPPAGFG-RGAPPPGF 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,739
Number of Sequences: 5004
Number of extensions: 62218
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)